Variant report

Variant	rs62027273
Chromosome Location	chr15:77220833-77220834
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:77195473..77197812-chr15:77219400..77222194,2	K562	blood:
2	chr15:77213948..77217003-chr15:77220696..77223782,5	K562	blood:
3	chr15:77212090..77213941-chr15:77219796..77221524,2	K562	blood:

Variant related genes	Relation type
ENSG00000140386	Chromatin interaction

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10519151	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16968467	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16968532	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16968536	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16968557	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2137309	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2221866	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2277891	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs280025	0.92[ASN][1000 genomes]
rs3825892	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58908956	0.92[ASN][1000 genomes]
rs62027262	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62027263	0.98[EUR][1000 genomes]
rs62027268	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62027269	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62027270	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027271	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027272	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027274	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027276	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027279	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62028724	0.92[ASN][1000 genomes]
rs62028726	0.92[ASN][1000 genomes]
rs62028727	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62028729	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62028730	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62028733	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62028734	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62028735	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62028737	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62028743	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029174	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62029175	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029178	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029179	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029180	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029182	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029183	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029184	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029186	0.91[EUR][1000 genomes]
rs62029187	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029188	0.91[EUR][1000 genomes]
rs62029189	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029190	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029192	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029194	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029195	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029196	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029197	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029230	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029231	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029233	0.91[EUR][1000 genomes]
rs62029234	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029235	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029236	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029237	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029239	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029240	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029241	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029245	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029247	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029248	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029249	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029250	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7164654	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7171104	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7179043	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73455381	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73457158	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73457161	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8034637	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8043385	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv3367577	chr15:77015618-77442634	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	esv2758388	chr15:77170550-77373448	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	esv2760041	chr15:77170550-77373448	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77220600-77221800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr15:77220600-77222200	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr15:77220800-77221000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr15:77220800-77221200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:77220800-77223000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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