Variant report

Variant	rs62028389
Chromosome Location	chr15:76696252-76696253
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:76695076..76699060-chr15:76702515..76705224,4	K562	blood:

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs1111257	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs157780	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1607016	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968120	0.91[ASN][1000 genomes]
rs16968160	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968201	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968212	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968215	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968231	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968233	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968242	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968254	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968310	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968311	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968316	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968319	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968335	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968336	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968364	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17462564	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28429680	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28461510	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs284908	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28573845	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28591605	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28721404	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28808106	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3743175	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55903433	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57311619	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59195449	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62026890	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62026892	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62026893	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028377	0.98[EUR][1000 genomes]
rs62028381	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028382	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028384	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028386	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028401	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62028402	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028403	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028407	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62028409	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028410	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62028411	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028413	0.95[EUR][1000 genomes]
rs62028416	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62028417	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028418	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028419	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028420	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028421	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028422	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028427	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028428	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028430	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028431	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028433	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028436	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028437	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028439	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030360	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030361	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030370	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030371	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030372	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030373	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030374	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030411	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030412	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030415	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030416	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030417	1.00[ASN][1000 genomes]
rs62030424	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030427	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74024121	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74024154	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8038119	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8038984	0.87[EUR][1000 genomes]
rs8039601	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8041308	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv510667	chr15:76653359-76708310	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76639800-76727400	Weak transcription	Right Ventricle	heart
2	chr15:76661000-76708600	Weak transcription	Brain Anterior Caudate	brain
3	chr15:76661200-76698000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr15:76661200-76710800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr15:76661600-76698000	Weak transcription	Dnd41	blood
6	chr15:76664800-76698000	Weak transcription	Brain Hippocampus Middle	brain
7	chr15:76666200-76706800	Weak transcription	Primary B cells from peripheral blood	blood
8	chr15:76666400-76698200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr15:76673200-76727400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr15:76674600-76718400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr15:76682600-76713800	Weak transcription	Fetal Intestine Small	intestine
12	chr15:76683200-76699000	Weak transcription	Gastric	stomach
13	chr15:76684800-76718200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr15:76686800-76697600	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr15:76686800-76699800	Weak transcription	Fetal Stomach	stomach
16	chr15:76689000-76698600	Weak transcription	Thymus	Thymus
17	chr15:76691000-76698000	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr15:76691000-76703600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr15:76691200-76698400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr15:76691200-76698400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr15:76691200-76698400	Weak transcription	Fetal Kidney	kidney
22	chr15:76693600-76720400	Weak transcription	Colon Smooth Muscle	Colon
23	chr15:76693800-76697200	Strong transcription	Liver	Liver
24	chr15:76694000-76697400	Weak transcription	Brain Cingulate Gyrus	brain
25	chr15:76694400-76696800	Weak transcription	Aorta	Aorta
26	chr15:76694400-76697000	Strong transcription	Rectal Mucosa Donor 29	rectum
27	chr15:76694400-76698000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr15:76694600-76697000	Strong transcription	Primary T cells from cord blood	blood
29	chr15:76694600-76697000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr15:76694600-76697000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr15:76694600-76697000	Strong transcription	Adipose Nuclei	Adipose
32	chr15:76694600-76697000	Strong transcription	Fetal Thymus	thymus
33	chr15:76694600-76697200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr15:76694600-76697400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr15:76694800-76697000	Strong transcription	Primary T cells fromperipheralblood	blood
36	chr15:76695000-76697000	Strong transcription	Fetal Brain Female	brain
37	chr15:76695200-76696600	Strong transcription	Primary T helper cells fromperipheralblood	blood
38	chr15:76695200-76697000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr15:76695200-76697000	Strong transcription	Fetal Muscle Leg	muscle
40	chr15:76695200-76697000	Strong transcription	Stomach Smooth Muscle	stomach
41	chr15:76695200-76697200	Strong transcription	Sigmoid Colon	Sigmoid Colon
42	chr15:76695400-76696600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr15:76695400-76697000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr15:76695400-76697000	Strong transcription	Duodenum Mucosa	Duodenum
45	chr15:76695400-76697000	Strong transcription	Fetal Muscle Trunk	muscle
46	chr15:76695400-76697000	Strong transcription	Left Ventricle	heart
47	chr15:76695400-76697000	Strong transcription	Ovary	ovary
48	chr15:76695400-76697000	Strong transcription	Rectal Mucosa Donor 31	rectum
49	chr15:76695400-76697000	Strong transcription	Skeletal Muscle Male	skeletal muscle
50	chr15:76695400-76697000	Strong transcription	Skeletal Muscle Female	skeletal muscle

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