Variant report

Variant	rs62028430
Chromosome Location	chr15:76769925-76769926
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs11072617	1.00[ASN][1000 genomes]
rs1111257	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs157780	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1607016	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968120	0.91[ASN][1000 genomes]
rs16968160	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968201	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968212	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968215	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968231	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968233	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968242	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968254	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968310	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968311	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968316	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968319	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968335	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968336	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968364	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17462564	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1838051	1.00[ASN][1000 genomes]
rs28429680	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28461510	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs284908	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28573845	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28591605	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28605733	1.00[ASN][1000 genomes]
rs28721404	1.00[ASN][1000 genomes]
rs28808106	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28886726	1.00[ASN][1000 genomes]
rs3743175	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55903433	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57311619	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58265327	1.00[ASN][1000 genomes]
rs59195449	1.00[ASN][1000 genomes]
rs62026890	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62026892	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62026893	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62026896	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62026900	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62026901	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62026904	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62026906	1.00[ASN][1000 genomes]
rs62028170	1.00[ASN][1000 genomes]
rs62028171	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028172	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028173	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028174	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028175	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028176	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028177	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028178	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028179	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028180	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028377	0.97[EUR][1000 genomes]
rs62028381	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028382	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028384	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028386	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028389	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028401	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62028402	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028403	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028407	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62028409	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028410	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62028411	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028413	1.00[EUR][1000 genomes]
rs62028416	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62028417	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028418	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028419	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028420	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028421	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028422	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028427	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028428	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028431	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028433	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028436	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028437	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028439	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030360	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030361	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030370	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030371	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030372	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030373	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030374	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030411	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030412	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030415	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030416	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030417	1.00[ASN][1000 genomes]
rs62030424	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030427	1.00[ASN][1000 genomes]
rs731731	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74024121	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74024154	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8038119	1.00[ASN][1000 genomes]
rs8038984	0.88[EUR][1000 genomes]
rs8039601	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8041308	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542438	chr15:76697056-76892157	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv542439	chr15:76762161-77196336	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
3	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76725800-76812600	Weak transcription	Left Ventricle	heart
2	chr15:76759800-76770400	Weak transcription	Colon Smooth Muscle	Colon
3	chr15:76760000-76772600	Weak transcription	GM12878-XiMat	blood
4	chr15:76760400-76773800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr15:76762000-76771400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr15:76762800-76771200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:76763000-76795000	Weak transcription	Primary B cells from cord blood	blood
8	chr15:76763200-76770200	Weak transcription	Adipose Nuclei	Adipose
9	chr15:76763600-76775200	Weak transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links