Variant report

Variant	rs62028459
Chromosome Location	chr15:76805203-76805204
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:76803456..76806308-chr15:77131835..77134067,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542438	chr15:76697056-76892157	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv542439	chr15:76762161-77196336	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
3	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv904400	chr15:76772062-77085283	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1053924	chr15:76803849-77089079	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76725800-76812600	Weak transcription	Left Ventricle	heart
2	chr15:76788400-76813600	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr15:76791200-76806200	Weak transcription	Fetal Muscle Leg	muscle
4	chr15:76794000-76810400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr15:76794200-76806400	Weak transcription	Gastric	stomach
6	chr15:76795200-76806800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr15:76795800-76810600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr15:76796800-76806400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr15:76797000-76806400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr15:76797200-76806400	Weak transcription	Liver	Liver
11	chr15:76797400-76825000	Weak transcription	Primary B cells from cord blood	blood
12	chr15:76800400-76806000	Weak transcription	Duodenum Mucosa	Duodenum
13	chr15:76804000-76805400	Enhancers	Fetal Stomach	stomach
14	chr15:76804000-76805600	Weak transcription	HepG2	liver
15	chr15:76804800-76805600	Strong transcription	Primary T cells from cord blood	blood
16	chr15:76804800-76808400	Enhancers	Fetal Intestine Small	intestine
17	chr15:76805000-76810200	Weak transcription	Fetal Heart	heart
18	chr15:76805200-76805600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr15:76805200-76805600	Enhancers	NHEK	skin
20	chr15:76805200-76808400	Enhancers	Fetal Intestine Large	intestine

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