Variant report

Variant	rs62028734
Chromosome Location	chr15:77058925-77058926
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:77051074..77052943-chr15:77058188..77061067,2	K562	blood:

Extended variants
information (count: 134 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:118)

rs_ID	r²[population]
rs10519151	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11072617	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs166793	0.87[EUR][1000 genomes]
rs16968467	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968532	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968536	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968557	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1838051	0.85[EUR][1000 genomes]
rs2137309	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2221866	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2277891	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs280006	0.85[EUR][1000 genomes]
rs280025	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs280036	0.90[EUR][1000 genomes]
rs28605733	0.85[EUR][1000 genomes]
rs28721404	0.85[EUR][1000 genomes]
rs28886726	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3825892	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55691654	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56116678	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56381843	0.88[EUR][1000 genomes]
rs58265327	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58908956	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59195449	0.85[EUR][1000 genomes]
rs59570104	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs59897136	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60963081	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62026890	0.87[EUR][1000 genomes]
rs62026892	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62026893	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62026896	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62026900	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62026901	0.87[EUR][1000 genomes]
rs62026902	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62026904	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62026906	0.85[EUR][1000 genomes]
rs62027262	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027263	0.87[EUR][1000 genomes]
rs62027268	0.85[EUR][1000 genomes]
rs62027269	0.85[EUR][1000 genomes]
rs62027270	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62027271	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62027272	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62027273	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62027274	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62027276	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62027279	1.00[ASN][1000 genomes]
rs62028170	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62028171	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62028172	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62028173	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62028174	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62028175	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62028176	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62028177	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62028178	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62028179	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62028180	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62028193	0.90[EUR][1000 genomes]
rs62028724	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028726	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028727	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028729	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028730	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028733	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028735	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028737	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028740	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62028741	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62028743	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029174	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029175	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029178	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029180	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029182	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029183	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029184	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029186	0.93[EUR][1000 genomes]
rs62029187	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029188	0.93[EUR][1000 genomes]
rs62029189	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029190	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029192	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029194	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029195	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029196	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029197	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029230	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029231	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029233	0.93[EUR][1000 genomes]
rs62029234	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029235	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029236	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029237	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029239	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029240	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029241	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029245	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029247	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029248	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029249	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029250	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030424	0.87[EUR][1000 genomes]
rs62030427	0.85[EUR][1000 genomes]
rs6495214	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7164654	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7171104	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7179043	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs731731	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73455381	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73457158	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73457161	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8023896	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8034637	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8038119	0.85[EUR][1000 genomes]
rs8042889	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8043385	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542439	chr15:76762161-77196336	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv904400	chr15:76772062-77085283	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1053924	chr15:76803849-77089079	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv904401	chr15:76816015-77085283	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	esv2830013	chr15:76863023-77176158	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
7	nsv904406	chr15:76869929-77085283	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
8	nsv904407	chr15:76869929-77121196	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
9	nsv904408	chr15:76884127-77085283	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1046137	chr15:76892097-77196336	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv542442	chr15:76892097-77196336	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv904411	chr15:76893186-77085283	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv904412	chr15:76910031-77085283	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv457206	chr15:76971456-77121196	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv570110	chr15:76971456-77121196	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	esv3367577	chr15:77015618-77442634	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77046800-77067800	Weak transcription	HUVEC	blood vessel
2	chr15:77051400-77059400	Strong transcription	Liver	Liver
3	chr15:77055000-77064000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr15:77056800-77059000	Strong transcription	Primary T helper cells PMA-I stimulated	--
5	chr15:77056800-77059600	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr15:77056800-77067600	Weak transcription	Osteobl	bone
7	chr15:77056800-77068600	Weak transcription	HSMMtube	muscle
8	chr15:77056800-77083400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr15:77057000-77059000	Strong transcription	Fetal Muscle Leg	muscle
10	chr15:77057000-77059200	Strong transcription	Adipose Nuclei	Adipose
11	chr15:77057000-77059200	Strong transcription	Brain Germinal Matrix	brain
12	chr15:77057000-77059200	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr15:77057000-77059400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr15:77057000-77059400	Weak transcription	Lung	lung
15	chr15:77057000-77059600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr15:77057000-77060600	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr15:77057000-77062400	Weak transcription	NHLF	lung
18	chr15:77057000-77066200	Weak transcription	Brain Anterior Caudate	brain
19	chr15:77057000-77066600	Weak transcription	HSMM	muscle
20	chr15:77057000-77068600	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr15:77057000-77068600	Weak transcription	Psoas Muscle	Psoas
22	chr15:77057000-77068800	Weak transcription	Fetal Stomach	stomach
23	chr15:77057000-77068800	Weak transcription	Pancreas	Pancrea
24	chr15:77057000-77072200	Weak transcription	Aorta	Aorta
25	chr15:77057000-77072200	Weak transcription	Esophagus	oesophagus
26	chr15:77057000-77072600	Weak transcription	Stomach Smooth Muscle	stomach
27	chr15:77057000-77074200	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr15:77057000-77083600	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr15:77057000-77084600	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr15:77057000-77084800	Weak transcription	Rectal Smooth Muscle	rectum
31	chr15:77057000-77092000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr15:77057000-77097200	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr15:77057200-77067000	Weak transcription	Brain Angular Gyrus	brain
34	chr15:77057200-77069000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr15:77057200-77072400	Weak transcription	Right Ventricle	heart
36	chr15:77057200-77073000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr15:77057200-77098400	Weak transcription	Brain Cingulate Gyrus	brain
38	chr15:77057400-77064800	Weak transcription	Fetal Lung	lung
39	chr15:77057400-77067800	Weak transcription	NHEK	skin
40	chr15:77057600-77059200	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr15:77057600-77059600	Strong transcription	Fetal Intestine Large	intestine
42	chr15:77057600-77059600	Strong transcription	Dnd41	blood
43	chr15:77057600-77067000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr15:77057600-77068600	Weak transcription	NHDF-Ad	bronchial
45	chr15:77057600-77069000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr15:77057800-77059400	Weak transcription	Spleen	Spleen
47	chr15:77057800-77060400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr15:77057800-77064800	Weak transcription	A549	lung
49	chr15:77057800-77068200	Weak transcription	Hela-S3	cervix
50	chr15:77057800-77068800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links