Variant report

Variant	rs62029174
Chromosome Location	chr15:77082385-77082386
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 125 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs10519151	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11072617	0.95[AMR][1000 genomes]
rs166793	0.81[EUR][1000 genomes]
rs16968467	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16968532	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16968536	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16968557	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2137309	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2221866	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2277891	0.92[EUR][1000 genomes]
rs280025	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs280036	0.83[EUR][1000 genomes]
rs28886726	0.95[AMR][1000 genomes]
rs3825892	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55691654	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56116678	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56381843	0.82[EUR][1000 genomes]
rs58265327	0.95[AMR][1000 genomes]
rs58908956	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59570104	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59897136	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs60963081	0.81[AMR][1000 genomes]
rs62026890	0.80[EUR][1000 genomes]
rs62026893	0.80[EUR][1000 genomes]
rs62026896	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62026900	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62026901	0.80[EUR][1000 genomes]
rs62026902	0.81[AMR][1000 genomes]
rs62026904	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62027262	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62027263	0.93[EUR][1000 genomes]
rs62027268	0.91[EUR][1000 genomes]
rs62027269	0.91[EUR][1000 genomes]
rs62027270	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62027271	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62027272	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62027273	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62027274	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62027276	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62027279	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62028170	0.81[AMR][1000 genomes]
rs62028171	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62028172	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62028173	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62028174	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62028175	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62028176	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62028177	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62028178	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62028179	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62028180	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62028193	0.83[EUR][1000 genomes]
rs62028724	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62028726	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62028727	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62028729	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62028730	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62028733	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62028734	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62028735	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62028737	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62028740	0.83[EUR][1000 genomes]
rs62028741	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62028743	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029175	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029178	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029179	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029180	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029182	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029183	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029184	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029186	1.00[EUR][1000 genomes]
rs62029187	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029188	1.00[EUR][1000 genomes]
rs62029189	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029190	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029192	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029194	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029195	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029196	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029197	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029230	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029231	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029233	1.00[EUR][1000 genomes]
rs62029234	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029235	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029236	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029237	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029239	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029240	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029241	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029245	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62029247	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62029248	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62029249	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62029250	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62030424	0.80[EUR][1000 genomes]
rs6495214	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7164654	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7171104	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7179043	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs731731	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73455381	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73457158	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73457161	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8023896	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8034637	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8042889	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8043385	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542439	chr15:76762161-77196336	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv904400	chr15:76772062-77085283	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1053924	chr15:76803849-77089079	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv904401	chr15:76816015-77085283	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	esv2830013	chr15:76863023-77176158	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
7	nsv904406	chr15:76869929-77085283	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
8	nsv904407	chr15:76869929-77121196	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
9	nsv904408	chr15:76884127-77085283	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1046137	chr15:76892097-77196336	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv542442	chr15:76892097-77196336	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv904411	chr15:76893186-77085283	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv904412	chr15:76910031-77085283	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv457206	chr15:76971456-77121196	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv570110	chr15:76971456-77121196	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	esv3367577	chr15:77015618-77442634	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77056800-77083400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr15:77057000-77083600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr15:77057000-77084600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr15:77057000-77084800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr15:77057000-77092000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr15:77057000-77097200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr15:77057200-77098400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr15:77057800-77098200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr15:77058000-77083000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr15:77058000-77083200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr15:77058000-77083200	Weak transcription	Fetal Thymus	thymus
12	chr15:77058000-77084000	Weak transcription	Fetal Heart	heart
13	chr15:77058000-77084400	Weak transcription	Left Ventricle	heart
14	chr15:77058000-77084800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr15:77058000-77084800	Weak transcription	Duodenum Mucosa	Duodenum
16	chr15:77058000-77084800	Weak transcription	Fetal Kidney	kidney
17	chr15:77058000-77085600	Weak transcription	Thymus	Thymus
18	chr15:77058000-77100200	Weak transcription	Fetal Brain Male	brain
19	chr15:77058000-77106000	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr15:77058200-77082600	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr15:77058200-77083400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr15:77058200-77084600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr15:77058200-77084800	Weak transcription	Brain Substantia Nigra	brain
24	chr15:77058200-77085400	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr15:77059000-77083000	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr15:77065400-77085200	Weak transcription	Colon Smooth Muscle	Colon
27	chr15:77067200-77084600	Weak transcription	Placenta	Placenta
28	chr15:77067400-77083000	Weak transcription	Brain Anterior Caudate	brain
29	chr15:77067400-77083600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr15:77067400-77086000	Weak transcription	Brain Angular Gyrus	brain
31	chr15:77067600-77083400	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr15:77069200-77085600	Weak transcription	Fetal Muscle Trunk	muscle
33	chr15:77069600-77083000	Weak transcription	Dnd41	blood
34	chr15:77069600-77085800	Weak transcription	Brain Germinal Matrix	brain
35	chr15:77069800-77082600	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr15:77070000-77082400	Weak transcription	Primary B cells from cord blood	blood
37	chr15:77070000-77083200	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr15:77070000-77083200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr15:77070000-77093600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr15:77070000-77097200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr15:77070200-77083000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr15:77070200-77085600	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr15:77072000-77083400	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr15:77072800-77083600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr15:77073000-77082600	Weak transcription	Primary B cells from peripheral blood	blood
46	chr15:77073000-77082800	Weak transcription	Liver	Liver
47	chr15:77073000-77083200	Weak transcription	Fetal Intestine Large	intestine
48	chr15:77073000-77083600	Weak transcription	Ovary	ovary
49	chr15:77073000-77084800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr15:77073000-77085400	Weak transcription	Rectal Mucosa Donor 29	rectum

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