Variant report

Variant	rs62029180
Chromosome Location	chr15:77105757-77105758
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 119 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs10519151	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11072617	1.00[AMR][1000 genomes]
rs166793	0.81[EUR][1000 genomes]
rs16968467	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968532	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968536	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968557	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2137309	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2221866	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2277891	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs280025	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs280036	0.83[EUR][1000 genomes]
rs28886726	1.00[AMR][1000 genomes]
rs3825892	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55691654	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56116678	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56381843	0.82[EUR][1000 genomes]
rs58265327	1.00[AMR][1000 genomes]
rs58908956	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59570104	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59897136	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs60963081	0.85[AMR][1000 genomes]
rs62026890	0.80[EUR][1000 genomes]
rs62026892	0.81[AMR][1000 genomes]
rs62026893	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62026896	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62026900	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62026901	0.80[EUR][1000 genomes]
rs62026902	0.85[AMR][1000 genomes]
rs62026904	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62027262	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027263	0.93[EUR][1000 genomes]
rs62027268	0.91[EUR][1000 genomes]
rs62027269	0.91[EUR][1000 genomes]
rs62027270	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62027271	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62027272	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62027273	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62027274	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62027276	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62027279	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028170	0.85[AMR][1000 genomes]
rs62028171	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62028172	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62028173	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62028174	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62028175	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62028176	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62028177	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62028178	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62028179	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62028180	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62028193	0.83[EUR][1000 genomes]
rs62028724	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028726	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028727	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028729	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028730	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028733	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028734	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028735	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028737	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028740	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62028741	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62028743	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029174	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029175	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029178	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029179	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029182	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029183	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029184	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029186	1.00[EUR][1000 genomes]
rs62029187	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029188	1.00[EUR][1000 genomes]
rs62029189	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029190	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029192	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029194	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029195	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029196	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029197	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029230	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029231	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029233	1.00[EUR][1000 genomes]
rs62029234	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029235	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029236	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029237	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029239	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029240	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029241	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029245	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029247	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029248	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029249	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029250	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030424	0.80[EUR][1000 genomes]
rs6495214	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7164654	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7171104	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7179043	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs731731	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73455381	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73457158	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73457161	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8023896	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8034637	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8042889	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8043385	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542439	chr15:76762161-77196336	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	esv2830013	chr15:76863023-77176158	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv904407	chr15:76869929-77121196	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1046137	chr15:76892097-77196336	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv542442	chr15:76892097-77196336	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv457206	chr15:76971456-77121196	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv570110	chr15:76971456-77121196	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv3367577	chr15:77015618-77442634	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77058000-77106000	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr15:77073000-77109200	Weak transcription	Spleen	Spleen
3	chr15:77073000-77125000	Weak transcription	Pancreas	Pancrea
4	chr15:77085400-77125000	Weak transcription	HSMM	muscle
5	chr15:77086400-77111000	Weak transcription	Thymus	Thymus
6	chr15:77090600-77107800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr15:77092800-77124800	Weak transcription	Ovary	ovary
8	chr15:77093200-77124800	Weak transcription	Primary B cells from cord blood	blood
9	chr15:77096200-77116400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr15:77096400-77113400	Weak transcription	Dnd41	blood
11	chr15:77096400-77116400	Weak transcription	Brain Angular Gyrus	brain
12	chr15:77096600-77124800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr15:77097000-77107800	Weak transcription	Left Ventricle	heart
14	chr15:77097000-77113200	Weak transcription	Primary B cells from peripheral blood	blood
15	chr15:77097000-77113200	Weak transcription	Primary T cells from cord blood	blood
16	chr15:77101200-77111000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr15:77101200-77124800	Weak transcription	Aorta	Aorta
18	chr15:77104800-77107800	Weak transcription	Fetal Intestine Small	intestine
19	chr15:77105000-77113600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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