Variant report

Variant	rs62029231
Chromosome Location	chr15:77143971-77143972
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 117 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs10519151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11072617	0.85[AMR][1000 genomes]
rs166793	0.81[EUR][1000 genomes]
rs16968467	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968532	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1838051	0.85[AMR][1000 genomes]
rs2137309	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2221866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2277891	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs280025	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs280036	0.83[EUR][1000 genomes]
rs28605733	0.85[AMR][1000 genomes]
rs28721404	0.85[AMR][1000 genomes]
rs28886726	0.85[AMR][1000 genomes]
rs3825892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55691654	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56116678	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56381843	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs58265327	0.85[AMR][1000 genomes]
rs58908956	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59570104	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59897136	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs60963081	1.00[AMR][1000 genomes]
rs62026893	0.80[EUR][1000 genomes]
rs62026896	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62026900	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62026901	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62026902	1.00[AMR][1000 genomes]
rs62026904	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62026906	0.85[AMR][1000 genomes]
rs62027262	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027263	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62027268	0.91[EUR][1000 genomes]
rs62027269	0.91[EUR][1000 genomes]
rs62027270	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62027271	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62027272	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62027273	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62027274	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62027276	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62027279	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028170	1.00[AMR][1000 genomes]
rs62028171	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62028172	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62028173	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62028174	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62028175	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62028176	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62028177	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62028178	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62028179	0.80[EUR][1000 genomes]
rs62028180	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62028193	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62028724	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028727	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028729	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028734	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028735	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028740	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62028741	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62028743	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029174	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029175	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029178	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029179	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029180	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029183	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029184	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029186	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62029187	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029188	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62029189	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029190	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029194	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029195	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029196	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029230	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029233	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62029234	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029236	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029240	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029241	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029245	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029247	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029248	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029249	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029250	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6495214	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7164654	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7171104	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7179043	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs731731	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73455381	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73457158	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73457161	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8023896	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8034637	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8042889	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8043385	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542439	chr15:76762161-77196336	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	esv2830013	chr15:76863023-77176158	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1046137	chr15:76892097-77196336	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv542442	chr15:76892097-77196336	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv3367577	chr15:77015618-77442634	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77111600-77144000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr15:77111600-77174200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr15:77112200-77196000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr15:77115400-77144600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr15:77116800-77144000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr15:77120400-77158400	Weak transcription	Colon Smooth Muscle	Colon
7	chr15:77123200-77144800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr15:77123200-77153200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr15:77124400-77149600	Weak transcription	HepG2	liver
10	chr15:77125800-77175400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr15:77126000-77145600	Weak transcription	Aorta	Aorta
12	chr15:77130600-77147400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr15:77131200-77155600	Weak transcription	Left Ventricle	heart
14	chr15:77131400-77148000	Weak transcription	Placenta	Placenta
15	chr15:77131800-77144000	Weak transcription	HSMM	muscle
16	chr15:77133200-77147600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr15:77133200-77196800	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr15:77137000-77144000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr15:77139600-77144000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr15:77139800-77145600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr15:77139800-77155600	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr15:77139800-77158400	Weak transcription	Rectal Smooth Muscle	rectum
23	chr15:77140000-77144800	Weak transcription	NHLF	lung
24	chr15:77140000-77153600	Weak transcription	Brain Cingulate Gyrus	brain
25	chr15:77140400-77144400	Weak transcription	Brain Anterior Caudate	brain
26	chr15:77140400-77144800	Weak transcription	Brain Hippocampus Middle	brain
27	chr15:77140800-77195800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr15:77141000-77144800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr15:77141200-77144200	ZNF genes & repeats	Brain Germinal Matrix	brain
30	chr15:77141200-77146400	ZNF genes & repeats	GM12878-XiMat	blood
31	chr15:77141400-77144000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr15:77141400-77171600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr15:77141600-77144000	Strong transcription	Duodenum Smooth Muscle	Duodenum
34	chr15:77141600-77144800	Strong transcription	Fetal Thymus	thymus
35	chr15:77141600-77146800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr15:77141800-77144200	Strong transcription	Fetal Intestine Large	intestine
37	chr15:77141800-77147400	Weak transcription	Fetal Kidney	kidney
38	chr15:77141800-77168000	Weak transcription	Spleen	Spleen
39	chr15:77142000-77148200	Weak transcription	Gastric	stomach
40	chr15:77142000-77158000	Weak transcription	Brain Angular Gyrus	brain
41	chr15:77142000-77167200	Weak transcription	Esophagus	oesophagus
42	chr15:77142000-77167800	Weak transcription	Pancreas	Pancrea
43	chr15:77142000-77175800	Weak transcription	Fetal Brain Male	brain
44	chr15:77142000-77195800	Weak transcription	Right Ventricle	heart
45	chr15:77142200-77144000	Strong transcription	Primary hematopoietic stem cells	blood
46	chr15:77142200-77144200	Strong transcription	Liver	Liver
47	chr15:77142200-77144400	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr15:77142200-77145400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr15:77142200-77167600	Weak transcription	Lung	lung
50	chr15:77142400-77144200	Strong transcription	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links