Variant report

Variant	rs62030372
Chromosome Location	chr15:76845854-76845855
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 129 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:119)

rs_ID	r²[population]
rs11072617	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1111257	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs157780	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1607016	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968120	0.91[ASN][1000 genomes]
rs16968160	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968201	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968212	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968215	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968231	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968233	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968242	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968254	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968310	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968311	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968316	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968319	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968335	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968336	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968364	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17462564	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1838051	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs280006	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs280025	0.81[EUR][1000 genomes]
rs280036	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28429680	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28461510	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs284908	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28573845	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28591605	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28605733	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28721404	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28808106	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28886726	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3743175	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55691654	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55903433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56116678	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56381843	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57311619	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58265327	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58908956	0.81[EUR][1000 genomes]
rs59195449	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59570104	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59897136	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60963081	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62026890	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62026892	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62026893	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62026896	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62026900	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62026901	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62026902	0.82[EUR][1000 genomes]
rs62026904	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62026906	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028170	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028171	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028172	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028173	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028174	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028175	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028176	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028177	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028178	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028179	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028180	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028193	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028377	0.88[EUR][1000 genomes]
rs62028381	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028382	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028384	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028386	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028389	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028401	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62028402	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028403	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028407	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62028409	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028410	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62028411	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028413	0.92[EUR][1000 genomes]
rs62028416	0.92[EUR][1000 genomes]
rs62028417	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028418	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028419	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028420	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028421	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028422	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028427	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028428	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028430	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028431	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028433	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028436	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028437	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028439	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030360	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030361	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030370	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030371	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030373	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030374	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030411	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030412	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030415	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030416	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030417	1.00[ASN][1000 genomes]
rs62030424	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030427	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6495214	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs731731	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74024121	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74024154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8023896	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8038119	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8038984	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8039601	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8041308	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8042889	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542438	chr15:76697056-76892157	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv542439	chr15:76762161-77196336	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
3	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv904400	chr15:76772062-77085283	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1053924	chr15:76803849-77089079	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv471254	chr15:76811390-76978139	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
7	nsv570021	chr15:76813920-76978139	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
8	nsv570022	chr15:76816015-76978139	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
9	nsv904401	chr15:76816015-77085283	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
10	nsv1042514	chr15:76838221-76906382	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76842800-76846200	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr15:76843000-76853400	Weak transcription	Brain Hippocampus Middle	brain
3	chr15:76843600-76846000	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr15:76843800-76850600	Weak transcription	Primary B cells from cord blood	blood
5	chr15:76844200-76846200	Strong transcription	Fetal Intestine Small	intestine
6	chr15:76844400-76846600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr15:76844600-76846000	Strong transcription	Pancreas	Pancrea
8	chr15:76845200-76846200	Enhancers	Fetal Thymus	thymus
9	chr15:76845200-76846600	Weak transcription	Fetal Stomach	stomach
10	chr15:76845400-76846000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:76845400-76846000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr15:76845400-76846000	Enhancers	Left Ventricle	heart
13	chr15:76845400-76846200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr15:76845400-76846200	Enhancers	Primary T cells fromperipheralblood	blood
15	chr15:76845400-76847000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr15:76845600-76846000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr15:76845600-76846400	Enhancers	Thymus	Thymus
18	chr15:76845600-76846600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr15:76845600-76847200	Enhancers	Dnd41	blood
20	chr15:76845800-76846000	Enhancers	Spleen	Spleen
21	chr15:76845800-76846200	Weak transcription	Lung	lung
22	chr15:76845800-76847000	Enhancers	Primary T cells from cord blood	blood
23	chr15:76845800-76847800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr15:76845800-76851400	Weak transcription	Right Ventricle	heart

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