Variant report

Variant	rs62030417
Chromosome Location	chr15:76886324-76886325
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 216 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs11072617	1.00[ASN][1000 genomes]
rs1111257	1.00[ASN][1000 genomes]
rs157780	1.00[ASN][1000 genomes]
rs1607016	1.00[ASN][1000 genomes]
rs16968120	0.91[ASN][1000 genomes]
rs16968160	1.00[ASN][1000 genomes]
rs16968201	1.00[ASN][1000 genomes]
rs16968212	1.00[ASN][1000 genomes]
rs16968215	1.00[ASN][1000 genomes]
rs16968231	1.00[ASN][1000 genomes]
rs16968233	1.00[ASN][1000 genomes]
rs16968242	1.00[ASN][1000 genomes]
rs16968254	1.00[ASN][1000 genomes]
rs16968310	1.00[ASN][1000 genomes]
rs16968311	1.00[ASN][1000 genomes]
rs16968316	1.00[ASN][1000 genomes]
rs16968319	1.00[ASN][1000 genomes]
rs16968335	1.00[ASN][1000 genomes]
rs16968336	1.00[ASN][1000 genomes]
rs16968364	1.00[ASN][1000 genomes]
rs17462564	1.00[ASN][1000 genomes]
rs1838051	1.00[ASN][1000 genomes]
rs280006	1.00[ASN][1000 genomes]
rs280036	0.92[ASN][1000 genomes]
rs28429680	1.00[ASN][1000 genomes]
rs28461510	1.00[ASN][1000 genomes]
rs284908	1.00[ASN][1000 genomes]
rs28573845	1.00[ASN][1000 genomes]
rs28591605	1.00[ASN][1000 genomes]
rs28605733	1.00[ASN][1000 genomes]
rs28721404	1.00[ASN][1000 genomes]
rs28808106	1.00[ASN][1000 genomes]
rs28886726	1.00[ASN][1000 genomes]
rs3743175	1.00[ASN][1000 genomes]
rs55691654	1.00[ASN][1000 genomes]
rs55903433	1.00[ASN][1000 genomes]
rs56116678	1.00[ASN][1000 genomes]
rs56381843	1.00[ASN][1000 genomes]
rs58265327	1.00[ASN][1000 genomes]
rs59195449	1.00[ASN][1000 genomes]
rs59570104	1.00[ASN][1000 genomes]
rs59897136	0.84[ASN][1000 genomes]
rs60963081	1.00[ASN][1000 genomes]
rs62026890	1.00[ASN][1000 genomes]
rs62026892	1.00[ASN][1000 genomes]
rs62026893	1.00[ASN][1000 genomes]
rs62026896	1.00[ASN][1000 genomes]
rs62026900	1.00[ASN][1000 genomes]
rs62026901	1.00[ASN][1000 genomes]
rs62026904	1.00[ASN][1000 genomes]
rs62026906	1.00[ASN][1000 genomes]
rs62028170	1.00[ASN][1000 genomes]
rs62028171	1.00[ASN][1000 genomes]
rs62028172	1.00[ASN][1000 genomes]
rs62028173	1.00[ASN][1000 genomes]
rs62028174	1.00[ASN][1000 genomes]
rs62028175	1.00[ASN][1000 genomes]
rs62028176	1.00[ASN][1000 genomes]
rs62028177	1.00[ASN][1000 genomes]
rs62028178	1.00[ASN][1000 genomes]
rs62028179	1.00[ASN][1000 genomes]
rs62028180	1.00[ASN][1000 genomes]
rs62028193	1.00[ASN][1000 genomes]
rs62028381	1.00[ASN][1000 genomes]
rs62028382	1.00[ASN][1000 genomes]
rs62028384	1.00[ASN][1000 genomes]
rs62028386	1.00[ASN][1000 genomes]
rs62028389	1.00[ASN][1000 genomes]
rs62028402	1.00[ASN][1000 genomes]
rs62028403	1.00[ASN][1000 genomes]
rs62028409	1.00[ASN][1000 genomes]
rs62028411	1.00[ASN][1000 genomes]
rs62028417	1.00[ASN][1000 genomes]
rs62028418	1.00[ASN][1000 genomes]
rs62028419	1.00[ASN][1000 genomes]
rs62028420	1.00[ASN][1000 genomes]
rs62028421	1.00[ASN][1000 genomes]
rs62028422	1.00[ASN][1000 genomes]
rs62028427	1.00[ASN][1000 genomes]
rs62028428	1.00[ASN][1000 genomes]
rs62028430	1.00[ASN][1000 genomes]
rs62028431	1.00[ASN][1000 genomes]
rs62028433	1.00[ASN][1000 genomes]
rs62028436	1.00[ASN][1000 genomes]
rs62028437	1.00[ASN][1000 genomes]
rs62028439	1.00[ASN][1000 genomes]
rs62030360	1.00[ASN][1000 genomes]
rs62030361	1.00[ASN][1000 genomes]
rs62030370	1.00[ASN][1000 genomes]
rs62030371	1.00[ASN][1000 genomes]
rs62030372	1.00[ASN][1000 genomes]
rs62030373	1.00[ASN][1000 genomes]
rs62030374	1.00[ASN][1000 genomes]
rs62030411	1.00[ASN][1000 genomes]
rs62030412	1.00[ASN][1000 genomes]
rs62030415	1.00[ASN][1000 genomes]
rs62030416	1.00[ASN][1000 genomes]
rs62030420	0.86[AMR][1000 genomes]
rs62030421	0.95[AMR][1000 genomes]
rs62030424	1.00[ASN][1000 genomes]
rs62030427	1.00[ASN][1000 genomes]
rs6495214	1.00[ASN][1000 genomes]
rs731731	1.00[ASN][1000 genomes]
rs74024121	1.00[ASN][1000 genomes]
rs74024154	1.00[ASN][1000 genomes]
rs8023896	1.00[ASN][1000 genomes]
rs8038119	1.00[ASN][1000 genomes]
rs8039601	1.00[ASN][1000 genomes]
rs8041308	1.00[ASN][1000 genomes]
rs8042889	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:106 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542438	chr15:76697056-76892157	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv542439	chr15:76762161-77196336	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
3	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv904400	chr15:76772062-77085283	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1053924	chr15:76803849-77089079	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv471254	chr15:76811390-76978139	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
7	nsv570021	chr15:76813920-76978139	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
8	nsv570022	chr15:76816015-76978139	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
9	nsv904401	chr15:76816015-77085283	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
10	nsv1042514	chr15:76838221-76906382	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
11	nsv1042089	chr15:76855098-77016127	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
12	nsv1038233	chr15:76855205-76895763	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
13	nsv1037282	chr15:76859309-76895763	Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
14	nsv1044453	chr15:76860198-76895763	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
15	nsv1620	chr15:76862152-76914288	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
16	nsv904402	chr15:76863023-76930805	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
17	esv2830013	chr15:76863023-77176158	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
18	nsv1042623	chr15:76863437-76999030	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
19	nsv1039269	chr15:76863437-77057021	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
20	nsv1048577	chr15:76868215-76895763	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
21	nsv1051037	chr15:76868215-76902257	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
22	nsv1038521	chr15:76869789-76895763	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
23	nsv1042304	chr15:76869929-76895763	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
24	esv3584695	chr15:76869929-76895775	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
25	nsv1042883	chr15:76869929-76902458	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
26	nsv904403	chr15:76869929-76951040	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
27	nsv904404	chr15:76869929-77033934	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
28	nsv904405	chr15:76869929-77047915	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
29	nsv904406	chr15:76869929-77085283	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
30	nsv904407	chr15:76869929-77121196	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
31	nsv1043878	chr15:76878362-76895763	ZNF genes & repeats Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
32	nsv1040711	chr15:76878362-76902257	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
33	nsv1040450	chr15:76878362-76902458	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
34	nsv1053005	chr15:76878362-76903184	ZNF genes & repeats Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
35	esv2760392	chr15:76878362-76903196	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
36	nsv1048948	chr15:76878362-76910031	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
37	nsv1052133	chr15:76878362-76962756	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
38	nsv510668	chr15:76879852-76901937	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
39	nsv116	chr15:76880628-76914288	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
40	esv1002951	chr15:76882072-76901779	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
41	esv3312204	chr15:76882597-76888295	Weak transcription Enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
42	esv3312205	chr15:76882597-76888295	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
43	esv3392222	chr15:76883297-76897145	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
44	esv1849821	chr15:76883346-76894787	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases
45	esv1820795	chr15:76883346-76895194	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
46	esv1823210	chr15:76883346-76895194	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
47	esv1830872	chr15:76883346-76895194	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
48	esv1845717	chr15:76883346-76895194	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases
49	esv1847265	chr15:76883346-76895194	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
50	esv1815271	chr15:76883346-76930805	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76882000-76887800	Weak transcription	Lung	lung
2	chr15:76882200-76991400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr15:76882400-76887800	Weak transcription	Primary B cells from cord blood	blood
4	chr15:76882400-76887800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr15:76882600-76886400	Weak transcription	Duodenum Smooth Muscle	Duodenum

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