Variant report

Variant	rs62043800
Chromosome Location	chr15:56177814-56177815
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12916104	0.85[ASN][1000 genomes]
rs1912399	0.86[ASN][1000 genomes]
rs2271289	0.83[ASN][1000 genomes]
rs2414450	0.85[ASN][1000 genomes]
rs34671862	0.81[ASN][1000 genomes]
rs8027843	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457157	chr15:55722213-56255774	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv569539	chr15:55722213-56255774	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	esv2761966	chr15:56167250-56192861	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3361699	chr15:56173709-56192307	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56153600-56178600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr15:56161200-56179800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr15:56166000-56185400	Weak transcription	Hela-S3	cervix
4	chr15:56172000-56186200	Weak transcription	Osteobl	bone
5	chr15:56172800-56189600	Weak transcription	Placenta	Placenta
6	chr15:56174600-56181000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr15:56175000-56178000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr15:56175000-56179800	Weak transcription	Liver	Liver
9	chr15:56175000-56181000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr15:56175200-56186000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr15:56175400-56178000	Weak transcription	Primary T cells from cord blood	blood
12	chr15:56175400-56186200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr15:56175600-56178200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr15:56175600-56186200	Weak transcription	NHEK	skin
15	chr15:56175800-56178600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr15:56175800-56184800	Weak transcription	HSMM	muscle
17	chr15:56175800-56189400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr15:56176000-56181200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr15:56176000-56216200	Weak transcription	Fetal Intestine Small	intestine
20	chr15:56176400-56178000	Enhancers	A549	lung
21	chr15:56176600-56180200	Weak transcription	Psoas Muscle	Psoas
22	chr15:56176800-56186800	Weak transcription	NH-A	brain
23	chr15:56177400-56185000	Weak transcription	Skeletal Muscle Male	skeletal muscle

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