Variant report

Variant	rs62045215
Chromosome Location	chr15:56256393-56256394
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56251937..56254023-chr15:56256235..56258687,3	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10518825	0.81[ASN][1000 genomes]
rs10518827	0.81[ASN][1000 genomes]
rs11071232	0.81[ASN][1000 genomes]
rs4774836	0.81[ASN][1000 genomes]
rs4774837	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61732704	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62045167	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62045168	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62045206	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62045209	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62045210	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62045212	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62045213	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62045214	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62045216	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62045217	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62045218	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7167999	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761872	chr15:56211065-56426501	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv904245	chr15:56229760-56324451	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv457159	chr15:56255774-56321854	Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv569543	chr15:56255774-56321854	Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56229400-56259000	Weak transcription	Ovary	ovary
2	chr15:56229400-56259400	Weak transcription	Small Intestine	intestine
3	chr15:56229600-56282600	Weak transcription	NHLF	lung
4	chr15:56229800-56259000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr15:56231400-56284200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr15:56231600-56260000	Weak transcription	Left Ventricle	heart
7	chr15:56232600-56257200	Weak transcription	Primary T cells from cord blood	blood
8	chr15:56236000-56258200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr15:56236000-56259000	Weak transcription	Fetal Muscle Trunk	muscle
10	chr15:56236000-56261200	Weak transcription	Esophagus	oesophagus
11	chr15:56236200-56257000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr15:56236200-56257000	Weak transcription	Aorta	Aorta
13	chr15:56236200-56276000	Weak transcription	HUVEC	blood vessel
14	chr15:56236600-56257000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr15:56236800-56257000	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr15:56236800-56282800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr15:56238200-56257000	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr15:56241000-56261400	Weak transcription	Pancreas	Pancrea
19	chr15:56243000-56257000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr15:56243200-56256400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr15:56243200-56256400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr15:56243200-56276200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr15:56243400-56257000	Weak transcription	Primary hematopoietic stem cells	blood
24	chr15:56244600-56257800	Weak transcription	Fetal Brain Male	brain
25	chr15:56247400-56257000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr15:56247600-56257400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr15:56248200-56285200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr15:56250000-56266600	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr15:56250600-56257200	Weak transcription	Fetal Stomach	stomach
30	chr15:56251200-56258200	Weak transcription	A549	lung
31	chr15:56251600-56281600	Weak transcription	Osteobl	bone
32	chr15:56252200-56261800	Weak transcription	Spleen	Spleen
33	chr15:56252400-56261200	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr15:56253200-56256400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr15:56253200-56256800	Weak transcription	Lung	lung
36	chr15:56253200-56259000	Weak transcription	Duodenum Mucosa	Duodenum
37	chr15:56253200-56261200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr15:56253200-56261400	Weak transcription	HSMMtube	muscle
39	chr15:56253400-56257000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr15:56253400-56257000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr15:56253400-56257000	Weak transcription	HSMM	muscle
42	chr15:56253400-56259000	Weak transcription	Adipose Nuclei	Adipose
43	chr15:56253400-56261200	Weak transcription	Gastric	stomach
44	chr15:56253400-56261600	Weak transcription	Placenta	Placenta
45	chr15:56253400-56261800	Weak transcription	HMEC	breast
46	chr15:56253600-56257000	Weak transcription	Fetal Intestine Large	intestine
47	chr15:56253600-56257000	Weak transcription	NHEK	skin
48	chr15:56253600-56282400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr15:56253800-56256800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr15:56254000-56258200	Weak transcription	Muscle Satellite Cultured Cells	--

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