Variant report

Variant rs62056778
Chromosome Location chr17:43971604-43971605
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:127 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:43970400-43971800 Enhancers Fetal Brain Male brain
2 chr17:43971000-43971800 Active TSS Brain Germinal Matrix brain
3 chr17:43971000-43972000 Active TSS Stomach Smooth Muscle stomach
4 chr17:43971000-43972200 Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
5 chr17:43971000-43972200 Active TSS Duodenum Smooth Muscle Duodenum
6 chr17:43971000-43972200 Bivalent/Poised TSS Stomach Mucosa stomach
7 chr17:43971000-43972200 Bivalent/Poised TSS NHEK skin
8 chr17:43971000-43972400 Active TSS Colon Smooth Muscle Colon
9 chr17:43971000-43972600 Bivalent/Poised TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
10 chr17:43971000-43972600 Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
11 chr17:43971000-43974200 Active TSS Brain Anterior Caudate brain
12 chr17:43971000-43974200 Active TSS Brain Hippocampus Middle brain
13 chr17:43971000-43974800 Active TSS Brain Dorsolateral Prefrontal Cortex brain
14 chr17:43971000-43974800 Active TSS Brain Substantia Nigra brain
15 chr17:43971000-43975400 Bivalent/Poised TSS iPS-18 Cell Line embryonic stem cell
16 chr17:43971200-43971800 Active TSS hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
17 chr17:43971200-43971800 Flanking Active TSS Primary T cells fromperipheralblood blood
18 chr17:43971200-43971800 Bivalent/Poised TSS Primary T regulatory cells fromperipheralblood blood
19 chr17:43971200-43971800 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
20 chr17:43971200-43971800 Active TSS Placenta Amnion Placenta Amnion
21 chr17:43971200-43972000 Active TSS Primary T helper naive cells fromperipheralblood blood
22 chr17:43971200-43972000 Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
23 chr17:43971200-43972000 Active TSS Foreskin Melanocyte Primary Cells skin01 Skin
24 chr17:43971200-43972000 Bivalent/Poised TSS Foreskin Melanocyte Primary Cells skin03 Skin
25 chr17:43971200-43972000 Active TSS Duodenum Mucosa Duodenum
26 chr17:43971200-43972000 Active TSS Fetal Brain Female brain
27 chr17:43971200-43972000 Bivalent/Poised TSS Fetal Thymus thymus
28 chr17:43971200-43972000 Active TSS Rectal Mucosa Donor 31 rectum
29 chr17:43971200-43972000 Active TSS Rectal Smooth Muscle rectum
30 chr17:43971200-43972200 Active TSS Primary Natural Killer cells fromperipheralblood blood
31 chr17:43971200-43972200 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
32 chr17:43971200-43972200 Bivalent/Poised TSS Fetal Intestine Large intestine
33 chr17:43971200-43972200 Bivalent/Poised TSS Fetal Intestine Small intestine
34 chr17:43971200-43972200 Bivalent/Poised TSS Fetal Muscle Leg muscle
35 chr17:43971200-43972200 Bivalent/Poised TSS Fetal Stomach stomach
36 chr17:43971200-43972200 Active TSS Ovary ovary
37 chr17:43971200-43972400 Bivalent/Poised TSS H1 Cell Line embryonic stem cell
38 chr17:43971200-43972400 Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
39 chr17:43971200-43972400 Active TSS Primary T helper 17 cells PMA-I stimulated --
40 chr17:43971200-43972400 Active TSS Primary T cells effector/memory enriched fromperipheralblood blood
41 chr17:43971200-43972600 Active TSS Ganglion Eminence derived primary cultured neurospheres brain
42 chr17:43971200-43972600 Active TSS Fetal Kidney kidney
43 chr17:43971200-43972600 Active TSS HSMMtube muscle
44 chr17:43971200-43972800 Flanking Active TSS Primary T helper cells PMA-I stimulated --
45 chr17:43971200-43972800 Flanking Active TSS Liver Liver
46 chr17:43971200-43973000 Active TSS Primary T killer memory cells from peripheral blood blood
47 chr17:43971200-43973200 Bivalent/Poised TSS hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
48 chr17:43971200-43973200 Active TSS Primary T helper naive cells from peripheral blood blood
49 chr17:43971200-43973200 Flanking Bivalent TSS/Enh Monocytes-CD14+_RO01746 blood
50 chr17:43971200-43973600 Bivalent/Poised TSS iPS-20b Cell Line embryonic stem cell

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