Variant report

Variant rs62056780
Chromosome Location chr17:43973652-43973653
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:86 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:43971000-43974200 Active TSS Brain Anterior Caudate brain
2 chr17:43971000-43974200 Active TSS Brain Hippocampus Middle brain
3 chr17:43971000-43974800 Active TSS Brain Dorsolateral Prefrontal Cortex brain
4 chr17:43971000-43974800 Active TSS Brain Substantia Nigra brain
5 chr17:43971000-43975400 Bivalent/Poised TSS iPS-18 Cell Line embryonic stem cell
6 chr17:43971200-43974200 Flanking Active TSS Primary T helper cells fromperipheralblood blood
7 chr17:43971200-43974200 Active TSS Brain Inferior Temporal Lobe brain
8 chr17:43971200-43975000 Active TSS Brain Cingulate Gyrus brain
9 chr17:43971200-43975000 Active TSS Pancreatic Islets Pancreatic Islet
10 chr17:43971200-43975200 Bivalent/Poised TSS HUES48 Cell Line embryonic stem cell
11 chr17:43971200-43975200 Bivalent/Poised TSS iPS-15b Cell Line embryonic stem cell
12 chr17:43971400-43973800 Active TSS Psoas Muscle Psoas
13 chr17:43971400-43975200 Bivalent/Poised TSS ES-I3 Cell Line embryonic stem cell
14 chr17:43971400-43975400 Bivalent/Poised TSS H9 Cell Line embryonic stem cell
15 chr17:43971400-43975400 Bivalent/Poised TSS HUES64 Cell Line embryonic stem cell
16 chr17:43971400-43975400 Active TSS Brain Angular Gyrus brain
17 chr17:43971600-43975400 Bivalent/Poised TSS HUES6 Cell Line embryonic stem cell
18 chr17:43971800-43973800 Bivalent/Poised TSS Brain Germinal Matrix brain
19 chr17:43971800-43974000 Enhancers Fetal Heart heart
20 chr17:43972000-43973800 Flanking Bivalent TSS/Enh iPS DF 19.11 Cell Line embryonic stem cell
21 chr17:43972000-43973800 Flanking Bivalent TSS/Enh Primary hematopoietic stem cells G-CSF-mobilized Male --
22 chr17:43972000-43973800 Bivalent/Poised TSS Rectal Smooth Muscle rectum
23 chr17:43972000-43974000 Bivalent/Poised TSS Fetal Brain Female brain
24 chr17:43972000-43974000 Flanking Active TSS Skeletal Muscle Female skeletal muscle
25 chr17:43972000-43974200 Flanking Bivalent TSS/Enh Fetal Adrenal Gland Adrenal Gland
26 chr17:43972200-43973800 Flanking Bivalent TSS/Enh Primary T cells fromperipheralblood blood
27 chr17:43972200-43974000 Flanking Bivalent TSS/Enh Fetal Muscle Trunk muscle
28 chr17:43972200-43974000 Flanking Bivalent TSS/Enh Fetal Muscle Leg muscle
29 chr17:43972200-43974000 Flanking Bivalent TSS/Enh Fetal Stomach stomach
30 chr17:43972400-43973800 Flanking Bivalent TSS/Enh Duodenum Smooth Muscle Duodenum
31 chr17:43972400-43974000 Flanking Bivalent TSS/Enh Stomach Smooth Muscle stomach
32 chr17:43972600-43973800 Flanking Bivalent TSS/Enh H9 Derived Neuron Cultured Cells ES cell derived
33 chr17:43972600-43975200 Bivalent Enhancer H1 Derived Mesenchymal Stem Cells ES cell derived
34 chr17:43972800-43973800 Flanking Active TSS Primary T helper memory cells from peripheral blood 1 blood
35 chr17:43972800-43973800 Bivalent/Poised TSS Fetal Intestine Small intestine
36 chr17:43972800-43973800 Bivalent Enhancer Fetal Thymus thymus
37 chr17:43972800-43973800 Bivalent/Poised TSS Left Ventricle heart
38 chr17:43972800-43974800 Bivalent/Poised TSS Fetal Intestine Large intestine
39 chr17:43972800-43974800 Bivalent Enhancer Placenta Placenta
40 chr17:43972800-43977600 Enhancers Liver Liver
41 chr17:43973000-43973800 Flanking Bivalent TSS/Enh Ganglion Eminence derived primary cultured neurospheres brain
42 chr17:43973000-43973800 Bivalent/Poised TSS Thymus Thymus
43 chr17:43973000-43973800 Flanking Bivalent TSS/Enh HepG2 liver
44 chr17:43973000-43974000 Flanking Bivalent TSS/Enh Primary T regulatory cells fromperipheralblood blood
45 chr17:43973000-43974000 Bivalent Enhancer Lung lung
46 chr17:43973000-43974000 Flanking Bivalent TSS/Enh A549 lung
47 chr17:43973000-43974200 Flanking Active TSS Primary T helper naive cells fromperipheralblood blood
48 chr17:43973000-43975000 Bivalent Enhancer Spleen Spleen
49 chr17:43973200-43973800 Flanking Bivalent TSS/Enh Breast Myoepithelial Primary Cells Breast
50 chr17:43973200-43973800 Flanking Active TSS Primary T helper naive cells from peripheral blood blood

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