The 2.0 version of rSNPBase

Variant report

Variant rs62064597
Chromosome Location chr17:43473307-43473308
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:100 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:43460800-43474800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr17:43463000-43473600 Weak transcription Left Ventricle heart
3 chr17:43463000-43482400 Weak transcription H9 Cell Line embryonic stem cell
4 chr17:43466200-43474400 Weak transcription Primary T helper naive cells from peripheral blood blood
5 chr17:43466600-43474800 Weak transcription Primary T killer naive cells fromperipheralblood blood
6 chr17:43467600-43474600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
7 chr17:43469200-43473400 Weak transcription Breast Myoepithelial Primary Cells Breast
8 chr17:43470600-43482400 Strong transcription Rectal Mucosa Donor 29 rectum
9 chr17:43470800-43483000 Strong transcription Lung lung
10 chr17:43470800-43483200 Strong transcription Monocytes-CD14+_RO01746 blood
11 chr17:43470800-43483400 Strong transcription Primary neutrophils fromperipheralblood blood
12 chr17:43470800-43483600 Strong transcription Primary mononuclear cells fromperipheralblood Blood
13 chr17:43471000-43475000 Weak transcription Small Intestine intestine
14 chr17:43471000-43475800 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
15 chr17:43471000-43482800 Strong transcription Primary B cells from peripheral blood blood
16 chr17:43471000-43483200 Strong transcription Primary T regulatory cells fromperipheralblood blood
17 chr17:43471000-43484400 Strong transcription Thymus Thymus
18 chr17:43471400-43477000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
19 chr17:43471400-43483000 Strong transcription Primary monocytes fromperipheralblood blood
20 chr17:43471400-43483400 Strong transcription Dnd41 blood
21 chr17:43471600-43483200 Strong transcription Sigmoid Colon Sigmoid Colon
22 chr17:43471600-43483400 Strong transcription Primary T helper cells fromperipheralblood blood
23 chr17:43471600-43483800 Strong transcription Primary T helper naive cells fromperipheralblood blood
24 chr17:43471600-43484600 Strong transcription Primary T cells from cord blood blood
25 chr17:43471800-43474800 Genic enhancers iPS DF 19.11 Cell Line embryonic stem cell
26 chr17:43471800-43483600 Strong transcription Primary T helper 17 cells PMA-I stimulated --
27 chr17:43471800-43483600 Strong transcription GM12878-XiMat blood
28 chr17:43471800-43483800 Strong transcription Primary T helper cells PMA-I stimulated --
29 chr17:43472000-43483200 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
30 chr17:43472200-43473400 Active TSS Colon Smooth Muscle Colon
31 chr17:43472200-43473600 Genic enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
32 chr17:43472200-43473800 Flanking Bivalent TSS/Enh Foreskin Fibroblast Primary Cells skin01 Skin
33 chr17:43472200-43474200 Genic enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
34 chr17:43472400-43473400 Flanking Active TSS Fetal Muscle Leg muscle
35 chr17:43472400-43473400 Genic enhancers Placenta Amnion Placenta Amnion
36 chr17:43472400-43483000 Strong transcription Primary hematopoietic stem cells short term culture blood
37 chr17:43472600-43473600 Strong transcription Right Atrium heart
38 chr17:43472600-43474400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
39 chr17:43472600-43474400 Weak transcription Primary B cells from cord blood blood
40 chr17:43472600-43477000 Weak transcription Fetal Heart heart
41 chr17:43472600-43477600 Weak transcription HMEC breast
42 chr17:43472600-43478200 Weak transcription NHEK skin
43 chr17:43472600-43478800 Weak transcription Hela-S3 cervix
44 chr17:43472600-43481800 Weak transcription Stomach Mucosa stomach
45 chr17:43472600-43482200 Weak transcription HUES48 Cell Line embryonic stem cell
46 chr17:43472600-43482200 Weak transcription iPS-18 Cell Line embryonic stem cell
47 chr17:43472600-43483000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
48 chr17:43472600-43483200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
49 chr17:43472600-43484200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
50 chr17:43472600-43485600 Weak transcription HSMMtube muscle

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Last update: Aug 31, 2015