Variant report
Variant | rs62064603 |
---|---|
Chromosome Location | chr17:43484496-43484497 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:32)
- CpG islands (count:61)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:32 , 50 per page) page:
1
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | NFIC | chr17:43484004-43484624 | HepG2 | liver: | n/a | n/a |
2 | CTCF | chr17:43484493-43484505 | GM19238 | blood: | n/a | n/a |
3 | SP1 | chr17:43484238-43484791 | HepG2 | liver: | n/a | n/a |
4 | MYC | chr17:43484282-43484627 | HepG2 | liver: | n/a | n/a |
5 | MAFK | chr17:43484437-43484686 | HepG2 | liver: | n/a | n/a |
6 | HNF4A | chr17:43484231-43484788 | HepG2 | liver: | n/a | chr17:43484459-43484472 chr17:43484456-43484474 chr17:43484458-43484473 chr17:43484458-43484472 chr17:43484458-43484473 chr17:43484459-43484471 chr17:43484458-43484473 chr17:43484459-43484471 |
7 | HNF4A | chr17:43484245-43484823 | HepG2 | liver: | n/a | chr17:43484459-43484472 chr17:43484456-43484474 chr17:43484458-43484473 chr17:43484458-43484472 chr17:43484458-43484473 chr17:43484459-43484471 chr17:43484458-43484473 chr17:43484459-43484471 |
8 | RCOR1 | chr17:43484391-43484679 | HepG2 | liver: | n/a | n/a |
9 | CTCF | chr17:43484480-43484630 | RPTEC | kidney: | n/a | n/a |
10 | MAX | chr17:43484297-43484567 | HepG2 | liver: | n/a | n/a |
11 | SMC3 | chr17:43484281-43484676 | HepG2 | liver: | n/a | n/a |
12 | MYBL2 | chr17:43484117-43484774 | HepG2 | liver: | n/a | n/a |
13 | HNF4G | chr17:43484208-43484713 | HepG2 | liver: | n/a | chr17:43484459-43484472 chr17:43484456-43484474 chr17:43484458-43484473 chr17:43484458-43484472 chr17:43484458-43484473 chr17:43484459-43484471 chr17:43484456-43484471 chr17:43484218-43484226 chr17:43484458-43484473 chr17:43484459-43484471 |
14 | PAX5 | chr17:43484253-43484514 | GM12878 | blood: | n/a | n/a |
15 | ELF1 | chr17:43484299-43484686 | HepG2 | liver: | n/a | n/a |
16 | CHD2 | chr17:43484430-43484686 | HepG2 | liver: | n/a | n/a |
17 | POLR2A | chr17:43484182-43484627 | HepG2 | liver: | n/a | n/a |
18 | POLR2A | chr17:43484358-43484598 | HepG2 | liver: | n/a | n/a |
19 | NFIC | chr17:43484052-43484754 | HepG2 | liver: | n/a | n/a |
20 | EP300 | chr17:43484265-43484561 | HepG2 | liver: | n/a | n/a |
21 | REST | chr17:43484188-43484700 | HepG2 | liver: | n/a | n/a |
22 | HNF4A | chr17:43484254-43484791 | HepG2 | liver: | n/a | chr17:43484459-43484472 chr17:43484456-43484474 chr17:43484458-43484473 chr17:43484458-43484472 chr17:43484458-43484473 chr17:43484459-43484471 chr17:43484458-43484473 chr17:43484459-43484471 |
23 | RFX5 | chr17:43484360-43484533 | HepG2 | liver: | n/a | n/a |
24 | CTCF | chr17:43484460-43484610 | HepG2 | liver: | n/a | n/a |
25 | CTCF | chr17:43484480-43484630 | Caco-2 | colon: | n/a | n/a |
26 | MAX | chr17:43484109-43484884 | HepG2 | liver: | n/a | n/a |
27 | RAD21 | chr17:43484419-43484613 | HepG2 | liver: | n/a | n/a |
28 | TBP | chr17:43484364-43484564 | HepG2 | liver: | n/a | n/a |
29 | HNF4G | chr17:43484127-43484831 | HepG2 | liver: | n/a | chr17:43484459-43484472 chr17:43484456-43484474 chr17:43484458-43484473 chr17:43484458-43484472 chr17:43484458-43484473 chr17:43484459-43484471 chr17:43484456-43484471 chr17:43484218-43484226 chr17:43484458-43484473 chr17:43484459-43484471 |
30 | ELF1 | chr17:43484206-43484662 | HepG2 | liver: | n/a | n/a |
31 | HDAC2 | chr17:43484090-43484746 | HepG2 | liver: | n/a | chr17:43484132-43484151 |
32 | MYBL2 | chr17:43484153-43484809 | HepG2 | liver: | n/a | n/a |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr17:43484496-43484546 | HCT-116 | colon: | n/a |
2 | chr17:43484496-43484546 | PFSK-1 | brain: | n/a |
3 | chr17:43484496-43484546 | HCF | heart: | n/a |
4 | chr17:43484496-43484546 | SK-N-SH | brain: | n/a |
5 | chr17:43484496-43484546 | SK-N-SH_RA | brain: | n/a |
6 | chr17:43484496-43484546 | SK-N-MC | brain: | n/a |
7 | chr17:43484496-43484546 | AoSMC | blood vessel: | n/a |
8 | chr17:43484496-43484546 | BJ | skin: | n/a |
9 | chr17:43484496-43484546 | U87 | brain: | n/a |
10 | chr17:43484496-43484546 | CMK | blood: | n/a |
11 | chr17:43484496-43484546 | RPTEC | kidney: | n/a |
12 | chr17:43484496-43484546 | K562 | blood: | n/a |
13 | chr17:43484496-43484546 | Caco-2 | colon: | n/a |
14 | chr17:43484496-43484546 | AG04450 | lung: | fetal |
15 | chr17:43484496-43484546 | HMEC | breast: | n/a |
16 | chr17:43484496-43484546 | BE2_C | brain: | n/a |
17 | chr17:43484496-43484546 | ovcar-3 | ovarian: | n/a |
18 | chr17:43484496-43484546 | GM19239 | blood: | n/a |
19 | chr17:43484496-43484546 | HEEpiC | esophagus: | n/a |
20 | chr17:43484496-43484546 | AG10803 | skin: | n/a |
21 | chr17:43484496-43484546 | PrEC | prostate: | n/a |
22 | chr17:43484496-43484546 | GM12878 | blood: | n/a |
23 | chr17:43484496-43484546 | HRPEpiC | eye: | n/a |
24 | chr17:43484496-43484546 | AG04449 | skin: | fetal |
25 | chr17:43484496-43484546 | HPAEpiC | pulmonary alveolar: | n/a |
26 | chr17:43484496-43484546 | HRE | kidney: | n/a |
27 | chr17:43484496-43484546 | IMR90 | lung: | fetal |
28 | chr17:43484496-43484546 | MCF10A-Er-Src | breast: | n/a |
29 | chr17:43484496-43484546 | Jurkat | blood: | n/a |
30 | chr17:43484496-43484546 | NHBE | bronchial: | n/a |
31 | chr17:43484496-43484546 | AG09319 | gingival: | n/a |
32 | chr17:43484496-43484546 | H1-hESC | embryonic stem cell: | embryo |
33 | chr17:43484496-43484546 | GM12891 | blood: | n/a |
34 | chr17:43484496-43484546 | HRCEpiC | kidney: | n/a |
35 | chr17:43484496-43484546 | HNPCEpiC | eye: | n/a |
36 | chr17:43484496-43484546 | HAEpiC | amniotic membrane: | n/a |
37 | chr17:43484496-43484546 | NB4 | blood: | n/a |
38 | chr17:43484496-43484546 | HEK293 | kidney: | embryo |
39 | chr17:43484496-43484546 | MCF-7 | breast: | n/a |
40 | chr17:43484496-43484546 | HL-60 | blood: | n/a |
41 | chr17:43484496-43484546 | PANC-1 | pancreas: | n/a |
42 | chr17:43484496-43484546 | GM06990 | blood: | n/a |
43 | chr17:43484496-43484546 | LNCaP | prostate: | n/a |
44 | chr17:43484496-43484546 | HCPEpiC | choroid plexus: | n/a |
45 | chr17:43484496-43484546 | HCM | heart: | n/a |
46 | chr17:43484496-43484546 | Hela-S3 | cervix: | n/a |
47 | chr17:43484496-43484546 | NT2-D1 | testis: | n/a |
48 | chr17:43484496-43484546 | HUVEC | blood vessel: | n/a |
49 | chr17:43484496-43484546 | NHDF-neo | bronchial: | n/a |
50 | chr17:43484496-43484546 | HepG2 | liver: | n/a |
(count:3 , 50 per page) page:
1
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ARHGAP27 | TF binding region |
ARHGAP27 | CpG island |
ENSG00000186834 | Chromatin interaction |
ENSG00000159314 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs11012 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12452273 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12939187 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12940792 | 0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12942666 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12942951 | 0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12946723 | 0.89[EUR][1000 genomes] |
rs12946900 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12947718 | 0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12949256 | 0.80[EUR][1000 genomes] |
rs12950965 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12952504 | 0.82[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs12952764 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs16940633 | 1.00[ASN][1000 genomes] |
rs1706748 | 1.00[ASN][1000 genomes] |
rs17631303 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17631676 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17686610 | 1.00[ASN][1000 genomes] |
rs17687462 | 1.00[ASN][1000 genomes] |
rs17687504 | 1.00[ASN][1000 genomes] |
rs17687534 | 1.00[ASN][1000 genomes] |
rs17687571 | 1.00[ASN][1000 genomes] |
rs17687625 | 1.00[ASN][1000 genomes] |
rs17687667 | 1.00[ASN][1000 genomes] |
rs17687740 | 1.00[ASN][1000 genomes] |
rs17687838 | 1.00[ASN][1000 genomes] |
rs17687849 | 1.00[ASN][1000 genomes] |
rs17688002 | 1.00[ASN][1000 genomes] |
rs17688032 | 1.00[ASN][1000 genomes] |
rs17688056 | 1.00[ASN][1000 genomes] |
rs17688068 | 1.00[ASN][1000 genomes] |
rs17688090 | 1.00[ASN][1000 genomes] |
rs17688126 | 1.00[ASN][1000 genomes] |
rs17688205 | 1.00[ASN][1000 genomes] |
rs17688249 | 1.00[ASN][1000 genomes] |
rs17688296 | 1.00[ASN][1000 genomes] |
rs17688767 | 1.00[ASN][1000 genomes] |
rs17688773 | 1.00[ASN][1000 genomes] |
rs17688875 | 1.00[ASN][1000 genomes] |
rs17688916 | 1.00[ASN][1000 genomes] |
rs17688922 | 1.00[ASN][1000 genomes] |
rs17688944 | 1.00[ASN][1000 genomes] |
rs17689104 | 1.00[ASN][1000 genomes] |
rs17689116 | 1.00[ASN][1000 genomes] |
rs17689182 | 1.00[ASN][1000 genomes] |
rs17689218 | 1.00[ASN][1000 genomes] |
rs17760577 | 1.00[ASN][1000 genomes] |
rs17760631 | 1.00[ASN][1000 genomes] |
rs17760733 | 1.00[ASN][1000 genomes] |
rs17760817 | 1.00[ASN][1000 genomes] |
rs17761046 | 1.00[ASN][1000 genomes] |
rs17761100 | 1.00[ASN][1000 genomes] |
rs17761124 | 1.00[ASN][1000 genomes] |
rs17761207 | 1.00[ASN][1000 genomes] |
rs17761387 | 1.00[ASN][1000 genomes] |
rs17761581 | 1.00[ASN][1000 genomes] |
rs17762073 | 1.00[ASN][1000 genomes] |
rs17762165 | 1.00[ASN][1000 genomes] |
rs17762308 | 1.00[ASN][1000 genomes] |
rs17762361 | 1.00[ASN][1000 genomes] |
rs17762535 | 1.00[ASN][1000 genomes] |
rs1808189 | 0.82[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs1879581 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1879582 | 1.00[ASN][1000 genomes] |
rs1879585 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1879586 | 1.00[ASN][1000 genomes] |
rs1971374 | 1.00[ASN][1000 genomes] |
rs2028078 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2077606 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2090847 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2139890 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2253488 | 1.00[ASN][1000 genomes] |
rs241020 | 1.00[ASN][1000 genomes] |
rs241021 | 1.00[ASN][1000 genomes] |
rs241028 | 1.00[ASN][1000 genomes] |
rs241032 | 1.00[ASN][1000 genomes] |
rs241033 | 1.00[ASN][1000 genomes] |
rs241041 | 1.00[ASN][1000 genomes] |
rs2458179 | 1.00[ASN][1000 genomes] |
rs2458187 | 1.00[ASN][1000 genomes] |
rs2462835 | 1.00[ASN][1000 genomes] |
rs2463523 | 1.00[ASN][1000 genomes] |
rs2668644 | 1.00[ASN][1000 genomes] |
rs2684526 | 1.00[ASN][1000 genomes] |
rs2693359 | 1.00[ASN][1000 genomes] |
rs2693362 | 1.00[ASN][1000 genomes] |
rs2942164 | 1.00[ASN][1000 genomes] |
rs2942165 | 1.00[ASN][1000 genomes] |
rs2942166 | 1.00[ASN][1000 genomes] |
rs2942167 | 1.00[ASN][1000 genomes] |
rs2942168 | 1.00[ASN][1000 genomes] |
rs2942169 | 1.00[ASN][1000 genomes] |
rs2942170 | 1.00[ASN][1000 genomes] |
rs2959992 | 1.00[ASN][1000 genomes] |
rs2960000 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3108317 | 1.00[ASN][1000 genomes] |
rs34018943 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs34063617 | 0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs34104358 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3418 | 1.00[ASN][1000 genomes] |
rs34286926 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs34363898 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs34465449 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs34792542 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs34887474 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs34915103 | 0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs35327136 | 0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs35389313 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs35489312 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs35519908 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs35626715 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs35884427 | 0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs36078910 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs36114997 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs365825 | 1.00[ASN][1000 genomes] |
rs383241 | 1.00[ASN][1000 genomes] |
rs385691 | 1.00[ASN][1000 genomes] |
rs389217 | 1.00[ASN][1000 genomes] |
rs389978 | 1.00[ASN][1000 genomes] |
rs392116 | 1.00[ASN][1000 genomes] |
rs393152 | 1.00[ASN][1000 genomes] |
rs393675 | 1.00[ASN][1000 genomes] |
rs393838 | 1.00[ASN][1000 genomes] |
rs3946526 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs396593 | 1.00[ASN][1000 genomes] |
rs3972613 | 1.00[ASN][1000 genomes] |
rs413778 | 1.00[ASN][1000 genomes] |
rs413917 | 1.00[ASN][1000 genomes] |
rs422112 | 1.00[ASN][1000 genomes] |
rs424243 | 1.00[ASN][1000 genomes] |
rs434428 | 1.00[ASN][1000 genomes] |
rs434598 | 1.00[ASN][1000 genomes] |
rs434805 | 1.00[ASN][1000 genomes] |
rs434971 | 1.00[ASN][1000 genomes] |
rs439558 | 1.00[ASN][1000 genomes] |
rs448830 | 1.00[ASN][1000 genomes] |
rs4763 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs5026246 | 1.00[ASN][1000 genomes] |
rs55642947 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs55643511 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs55648326 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs55651627 | 1.00[ASN][1000 genomes] |
rs55652155 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs55663797 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs55669046 | 1.00[ASN][1000 genomes] |
rs55671319 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs55688739 | 1.00[ASN][1000 genomes] |
rs55703888 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs55746869 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs55790407 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs55793500 | 0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs55914643 | 0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs55925547 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs55972157 | 1.00[ASN][1000 genomes] |
rs55974014 | 1.00[ASN][1000 genomes] |
rs55980621 | 1.00[ASN][1000 genomes] |
rs56005713 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs56015792 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs56020833 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs56100013 | 1.00[ASN][1000 genomes] |
rs56110538 | 1.00[ASN][1000 genomes] |
rs56159231 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs56168933 | 0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs56192752 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs56212100 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs56220387 | 0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs56236914 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs56323832 | 1.00[ASN][1000 genomes] |
rs56328224 | 1.00[ASN][1000 genomes] |
rs56378631 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs56397077 | 1.00[ASN][1000 genomes] |
rs56400821 | 1.00[ASN][1000 genomes] |
rs593720 | 1.00[ASN][1000 genomes] |
rs61667602 | 1.00[ASN][1000 genomes] |
rs62053939 | 1.00[ASN][1000 genomes] |
rs62053940 | 1.00[ASN][1000 genomes] |
rs62053943 | 1.00[ASN][1000 genomes] |
rs62053945 | 1.00[ASN][1000 genomes] |
rs62053946 | 1.00[ASN][1000 genomes] |
rs62053947 | 1.00[ASN][1000 genomes] |
rs62053948 | 1.00[ASN][1000 genomes] |
rs62053949 | 1.00[ASN][1000 genomes] |
rs62053950 | 1.00[ASN][1000 genomes] |
rs62053951 | 1.00[ASN][1000 genomes] |
rs62053952 | 1.00[ASN][1000 genomes] |
rs62053953 | 1.00[ASN][1000 genomes] |
rs62053954 | 1.00[ASN][1000 genomes] |
rs62053955 | 1.00[ASN][1000 genomes] |
rs62053956 | 1.00[ASN][1000 genomes] |
rs62053957 | 1.00[ASN][1000 genomes] |
rs62053958 | 1.00[ASN][1000 genomes] |
rs62053959 | 1.00[ASN][1000 genomes] |
rs62055660 | 1.00[ASN][1000 genomes] |
rs62055661 | 1.00[ASN][1000 genomes] |
rs62055662 | 1.00[ASN][1000 genomes] |
rs62055663 | 1.00[ASN][1000 genomes] |
rs62055664 | 1.00[ASN][1000 genomes] |
rs62055665 | 1.00[ASN][1000 genomes] |
rs62055689 | 1.00[ASN][1000 genomes] |
rs62055691 | 1.00[ASN][1000 genomes] |
rs62055692 | 1.00[ASN][1000 genomes] |
rs62055693 | 1.00[ASN][1000 genomes] |
rs62055696 | 1.00[ASN][1000 genomes] |
rs62055697 | 1.00[ASN][1000 genomes] |
rs62055698 | 1.00[ASN][1000 genomes] |
rs62055700 | 1.00[ASN][1000 genomes] |
rs62055701 | 1.00[ASN][1000 genomes] |
rs62055702 | 1.00[ASN][1000 genomes] |
rs62055704 | 1.00[ASN][1000 genomes] |
rs62055705 | 1.00[ASN][1000 genomes] |
rs62055707 | 1.00[ASN][1000 genomes] |
rs62055708 | 1.00[ASN][1000 genomes] |
rs62055709 | 1.00[ASN][1000 genomes] |
rs62055710 | 1.00[ASN][1000 genomes] |
rs62055712 | 1.00[ASN][1000 genomes] |
rs62055713 | 1.00[ASN][1000 genomes] |
rs62055714 | 1.00[ASN][1000 genomes] |
rs62055715 | 1.00[ASN][1000 genomes] |
rs62055716 | 1.00[ASN][1000 genomes] |
rs62055717 | 1.00[ASN][1000 genomes] |
rs62055751 | 1.00[ASN][1000 genomes] |
rs62055752 | 1.00[ASN][1000 genomes] |
rs62055753 | 1.00[ASN][1000 genomes] |
rs62055754 | 1.00[ASN][1000 genomes] |
rs62056874 | 1.00[ASN][1000 genomes] |
rs62056875 | 1.00[ASN][1000 genomes] |
rs62056876 | 1.00[ASN][1000 genomes] |
rs62056877 | 1.00[ASN][1000 genomes] |
rs62056878 | 1.00[ASN][1000 genomes] |
rs62056879 | 1.00[ASN][1000 genomes] |
rs62056880 | 1.00[ASN][1000 genomes] |
rs62056881 | 1.00[ASN][1000 genomes] |
rs62056905 | 1.00[ASN][1000 genomes] |
rs62056906 | 1.00[ASN][1000 genomes] |
rs62056908 | 1.00[ASN][1000 genomes] |
rs62056909 | 1.00[ASN][1000 genomes] |
rs62056910 | 1.00[ASN][1000 genomes] |
rs62056911 | 1.00[ASN][1000 genomes] |
rs62056912 | 1.00[ASN][1000 genomes] |
rs62056913 | 1.00[ASN][1000 genomes] |
rs62056915 | 1.00[ASN][1000 genomes] |
rs62056916 | 1.00[ASN][1000 genomes] |
rs62056917 | 1.00[ASN][1000 genomes] |
rs62056918 | 1.00[ASN][1000 genomes] |
rs62056919 | 1.00[ASN][1000 genomes] |
rs62056920 | 1.00[ASN][1000 genomes] |
rs62056921 | 1.00[ASN][1000 genomes] |
rs62056922 | 1.00[ASN][1000 genomes] |
rs62056925 | 1.00[ASN][1000 genomes] |
rs62056926 | 1.00[ASN][1000 genomes] |
rs62056927 | 1.00[ASN][1000 genomes] |
rs62056928 | 1.00[ASN][1000 genomes] |
rs62056929 | 1.00[ASN][1000 genomes] |
rs62056930 | 1.00[ASN][1000 genomes] |
rs62056931 | 1.00[ASN][1000 genomes] |
rs62064364 | 1.00[ASN][1000 genomes] |
rs62064597 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62064598 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62064600 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62064637 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62064641 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62064643 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62064645 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62064646 | 0.95[EUR][1000 genomes] |
rs62064647 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62064649 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62064651 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs62064652 | 0.86[EUR][1000 genomes] |
rs62064653 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62064654 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62064655 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62064657 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62065374 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62065376 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62065377 | 0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62065378 | 0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62065379 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62065380 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62065385 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62065389 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62065391 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62065392 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62065393 | 1.00[ASN][1000 genomes] |
rs62065399 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62065403 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62065404 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62065436 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62065437 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62065438 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62065441 | 1.00[ASN][1000 genomes] |
rs62065442 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62065444 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62065445 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62065447 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62065448 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62065449 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62065452 | 1.00[ASN][1000 genomes] |
rs62065453 | 1.00[ASN][1000 genomes] |
rs62065459 | 1.00[ASN][1000 genomes] |
rs62066128 | 1.00[ASN][1000 genomes] |
rs62066460 | 1.00[ASN][1000 genomes] |
rs71238846 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs71373560 | 0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs71373572 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7209501 | 0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7220206 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7222389 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7222444 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73984391 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs8071011 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs9730 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:39 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv431632 | chr17:43199763-43733983 | Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 210 gene(s) | inside rSNPs | diseases |
2 | nsv431633 | chr17:43199763-43772540 | Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 210 gene(s) | inside rSNPs | diseases |
3 | nsv431634 | chr17:43346980-43659975 | Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 56 gene(s) | inside rSNPs | diseases |
4 | nsv482844 | chr17:43361648-43488185 | Enhancers Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 33 gene(s) | inside rSNPs | diseases |
5 | nsv427997 | chr17:43361649-43488185 | Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 33 gene(s) | inside rSNPs | diseases |
6 | nsv431636 | chr17:43403005-43659881 | Active TSS Genic enhancers Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 39 gene(s) | inside rSNPs | diseases |
7 | esv2754858 | chr17:43403005-43666906 | Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 44 gene(s) | inside rSNPs | diseases |
8 | nsv431637 | chr17:43403005-43716885 | Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 49 gene(s) | inside rSNPs | diseases |
9 | nsv428342 | chr17:43443554-43651084 | Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 32 gene(s) | inside rSNPs | diseases |
10 | esv2757659 | chr17:43457886-43733983 | Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 45 gene(s) | inside rSNPs | diseases |
11 | esv2758691 | chr17:43457886-43816023 | Enhancers Flanking Active TSS Genic enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 47 gene(s) | inside rSNPs | diseases |
12 | esv2755280 | chr17:43459697-43666906 | Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 40 gene(s) | inside rSNPs | diseases |
13 | nsv908304 | chr17:43467025-43524511 | Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
14 | nsv1065930 | chr17:43467291-44151468 | Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 51 gene(s) | inside rSNPs | diseases |
15 | nsv431638 | chr17:43470156-43693538 | Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 41 gene(s) | inside rSNPs | diseases |
16 | esv2755741 | chr17:43470760-43655688 | Bivalent/Poised TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 32 gene(s) | inside rSNPs | diseases |
17 | nsv431639 | chr17:43470760-43659355 | Bivalent Enhancer Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 32 gene(s) | inside rSNPs | diseases |
18 | esv2754089 | chr17:43470760-43659881 | Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 33 gene(s) | inside rSNPs | diseases |
19 | esv34266 | chr17:43470760-43659975 | Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 33 gene(s) | inside rSNPs | diseases |
20 | esv34577 | chr17:43470760-43659975 | Genic enhancers Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 33 gene(s) | inside rSNPs | diseases |
21 | esv2752564 | chr17:43470760-43659975 | Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 33 gene(s) | inside rSNPs | diseases |
22 | esv2753343 | chr17:43470760-43659975 | Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 33 gene(s) | inside rSNPs | diseases |
23 | esv2753852 | chr17:43470760-43659975 | Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 33 gene(s) | inside rSNPs | diseases |
24 | esv2754692 | chr17:43470760-43659975 | Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 33 gene(s) | inside rSNPs | diseases |
25 | esv2754773 | chr17:43470760-43659975 | Strong transcription Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 33 gene(s) | inside rSNPs | diseases |
26 | esv2754821 | chr17:43470760-43659975 | Genic enhancers Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 33 gene(s) | inside rSNPs | diseases |
27 | esv2755261 | chr17:43470760-43659975 | Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 33 gene(s) | inside rSNPs | diseases |
28 | esv2755434 | chr17:43470760-43659975 | Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 33 gene(s) | inside rSNPs | diseases |
29 | esv2755618 | chr17:43470760-43659975 | Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 33 gene(s) | inside rSNPs | diseases |
30 | esv2756206 | chr17:43470760-43659975 | Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 33 gene(s) | inside rSNPs | diseases |
31 | esv2756211 | chr17:43470760-43659975 | Bivalent/Poised TSS Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 33 gene(s) | inside rSNPs | diseases |
32 | esv2756238 | chr17:43470760-43659975 | Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 33 gene(s) | inside rSNPs | diseases |
33 | esv2756640 | chr17:43470760-43659975 | Flanking Active TSS Genic enhancers Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 33 gene(s) | inside rSNPs | diseases |
34 | esv34307 | chr17:43470760-43666906 | Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 38 gene(s) | inside rSNPs | diseases |
35 | esv2755466 | chr17:43470760-43666906 | Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 38 gene(s) | inside rSNPs | diseases |
36 | esv2756448 | chr17:43470760-43666906 | Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 38 gene(s) | inside rSNPs | diseases |
37 | nsv431640 | chr17:43470760-43666906 | Weak transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 38 gene(s) | inside rSNPs | diseases |
38 | esv2753768 | chr17:43470760-43734304 | Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 43 gene(s) | inside rSNPs | diseases |
39 | esv2754725 | chr17:43470760-43741452 | Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 43 gene(s) | inside rSNPs | diseases |
SNP | Gene | Cis/trans | Tissue | Source |
---|---|---|---|---|
rs62064603 | LRRC37A4 | cis | multi-tissue | Pritchard |
rs62064603 | LRRC37A4 | Cis_1M | lymphoblastoid | RTeQTL |
rs62064603 | ARHGAP27 | Cis_1M | lymphoblastoid | RTeQTL |
rs62064603 | ARL17 | Cis_1M | lymphoblastoid | RTeQTL |
rs62064603 | MAPK8IP1 | trans | lymphoblastoid | RTeQTL |
rs62064603 | LOC644246 | Cis_1M | lymphoblastoid | RTeQTL |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr17:43471600-43484600 | Strong transcription | Primary T cells from cord blood | blood |
2 | chr17:43472600-43485600 | Weak transcription | HSMMtube | muscle |
3 | chr17:43472800-43487400 | Weak transcription | HUVEC | blood vessel |
4 | chr17:43475800-43490400 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
5 | chr17:43479400-43489600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
6 | chr17:43481600-43485400 | Genic enhancers | Primary T cells fromperipheralblood | blood |
7 | chr17:43482200-43486400 | Weak transcription | Brain Dorsolateral Prefrontal Cortex | brain |
8 | chr17:43482200-43486800 | Weak transcription | Liver | Liver |
9 | chr17:43482200-43487200 | Weak transcription | Brain Inferior Temporal Lobe | brain |
10 | chr17:43482400-43485400 | Weak transcription | Small Intestine | intestine |
11 | chr17:43482400-43485600 | Weak transcription | Brain Angular Gyrus | brain |
12 | chr17:43482400-43486400 | Weak transcription | Brain Anterior Caudate | brain |
13 | chr17:43482400-43486600 | Weak transcription | Brain Cingulate Gyrus | brain |
14 | chr17:43482400-43486600 | Weak transcription | NHEK | skin |
15 | chr17:43482400-43487000 | Weak transcription | Pancreas | Pancrea |
16 | chr17:43482400-43501600 | Weak transcription | HMEC | breast |
17 | chr17:43482600-43486600 | Weak transcription | Foreskin Keratinocyte Primary Cells skin02 | Skin |
18 | chr17:43482800-43486200 | Weak transcription | K562 | blood |
19 | chr17:43483000-43484600 | Genic enhancers | Left Ventricle | heart |
20 | chr17:43483000-43484800 | Genic enhancers | Primary monocytes fromperipheralblood | blood |
21 | chr17:43483200-43484800 | Enhancers | Right Atrium | heart |
22 | chr17:43483200-43485400 | Genic enhancers | Primary T regulatory cells fromperipheralblood | blood |
23 | chr17:43483200-43485400 | Weak transcription | Primary T cells effector/memory enriched fromperipheralblood | blood |
24 | chr17:43483200-43485600 | Enhancers | Primary hematopoietic stem cells | blood |
25 | chr17:43483200-43485600 | Weak transcription | Placenta Amnion | Placenta Amnion |
26 | chr17:43483200-43496000 | Weak transcription | Hela-S3 | cervix |
27 | chr17:43483400-43484600 | Enhancers | Placenta | Placenta |
28 | chr17:43483400-43484800 | Enhancers | H1 Derived Mesenchymal Stem Cells | ES cell derived |
29 | chr17:43483400-43485200 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
30 | chr17:43483400-43485400 | Enhancers | Sigmoid Colon | Sigmoid Colon |
31 | chr17:43483400-43485600 | Genic enhancers | Primary T helper cells fromperipheralblood | blood |
32 | chr17:43483400-43485600 | Weak transcription | Right Ventricle | heart |
33 | chr17:43483400-43485800 | Weak transcription | Esophagus | oesophagus |
34 | chr17:43483400-43486200 | Weak transcription | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
35 | chr17:43483400-43486600 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
36 | chr17:43483400-43487000 | Weak transcription | Colon Smooth Muscle | Colon |
37 | chr17:43483400-43487200 | Enhancers | Stomach Mucosa | stomach |
38 | chr17:43483400-43488800 | Weak transcription | Psoas Muscle | Psoas |
39 | chr17:43483600-43484600 | Enhancers | H1 Cell Line | embryonic stem cell |
40 | chr17:43483600-43484600 | Enhancers | HUES6 Cell Line | embryonic stem cell |
41 | chr17:43483600-43484600 | Genic enhancers | Primary mononuclear cells fromperipheralblood | Blood |
42 | chr17:43483600-43484600 | Enhancers | Fetal Adrenal Gland | Adrenal Gland |
43 | chr17:43483600-43485400 | Enhancers | Primary T helper memory cells from peripheral blood 2 | blood |
44 | chr17:43483600-43485600 | Weak transcription | Duodenum Smooth Muscle | Duodenum |
45 | chr17:43483600-43485600 | Genic enhancers | Fetal Thymus | thymus |
46 | chr17:43483600-43485800 | Weak transcription | Brain Substantia Nigra | brain |
47 | chr17:43483800-43484600 | Enhancers | Breast Myoepithelial Primary Cells | Breast |
48 | chr17:43483800-43484800 | Enhancers | ES-I3 Cell Line | embryonic stem cell |
49 | chr17:43483800-43484800 | Flanking Active TSS | Rectal Mucosa Donor 29 | rectum |
50 | chr17:43483800-43485000 | Weak transcription | HUES48 Cell Line | embryonic stem cell |