The 2.0 version of rSNPBase

Variant report

Variant rs62065404
Chromosome Location chr17:43551613-43551614
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:108 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:43510800-43567200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr17:43518000-43552600 Weak transcription Cortex derived primary cultured neurospheres brain
3 chr17:43518200-43552200 Weak transcription Rectal Smooth Muscle rectum
4 chr17:43519600-43564600 Weak transcription HSMMtube muscle
5 chr17:43523000-43567200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
6 chr17:43523800-43560000 Weak transcription NHDF-Ad bronchial
7 chr17:43524400-43567000 Weak transcription Primary T killer memory cells from peripheral blood blood
8 chr17:43527600-43556800 Weak transcription Fetal Lung lung
9 chr17:43529000-43560000 Weak transcription Primary hematopoietic stem cells blood
10 chr17:43529000-43566600 Weak transcription Colon Smooth Muscle Colon
11 chr17:43531600-43551800 Weak transcription Placenta Amnion Placenta Amnion
12 chr17:43531600-43552400 Weak transcription Aorta Aorta
13 chr17:43532000-43552400 Weak transcription Right Ventricle heart
14 chr17:43533800-43553800 Weak transcription Fetal Brain Female brain
15 chr17:43534000-43552200 Weak transcription Brain Hippocampus Middle brain
16 chr17:43534000-43554200 Weak transcription Brain Germinal Matrix brain
17 chr17:43534000-43559000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
18 chr17:43534200-43552400 Weak transcription Brain Angular Gyrus brain
19 chr17:43534400-43552200 Weak transcription Fetal Muscle Leg muscle
20 chr17:43539600-43551800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
21 chr17:43539600-43555000 Weak transcription NHLF lung
22 chr17:43539800-43552200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
23 chr17:43539800-43564800 Weak transcription HSMM muscle
24 chr17:43540000-43555000 Weak transcription A549 lung
25 chr17:43540200-43552400 Weak transcription Rectal Mucosa Donor 31 rectum
26 chr17:43540200-43552400 Weak transcription Osteobl bone
27 chr17:43540200-43566600 Weak transcription Primary T killer naive cells fromperipheralblood blood
28 chr17:43540200-43567200 Weak transcription ES-I3 Cell Line embryonic stem cell
29 chr17:43540200-43567200 Weak transcription GM12878-XiMat blood
30 chr17:43540800-43552400 Weak transcription Colonic Mucosa Colon
31 chr17:43540800-43556000 Strong transcription Monocytes-CD14+_RO01746 blood
32 chr17:43543600-43555000 Weak transcription H9 Cell Line embryonic stem cell
33 chr17:43546000-43552400 Weak transcription Primary T cells from cord blood blood
34 chr17:43546200-43552200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
35 chr17:43546400-43552400 Weak transcription Brain Substantia Nigra brain
36 chr17:43546600-43552200 Weak transcription Primary T helper naive cells fromperipheralblood blood
37 chr17:43546600-43552400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
38 chr17:43546600-43552400 Weak transcription Fetal Muscle Trunk muscle
39 chr17:43546600-43559200 Weak transcription Ovary ovary
40 chr17:43546600-43565000 Weak transcription Brain Cingulate Gyrus brain
41 chr17:43546800-43552200 Weak transcription Duodenum Smooth Muscle Duodenum
42 chr17:43546800-43552400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
43 chr17:43546800-43552400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
44 chr17:43546800-43560000 Weak transcription Stomach Mucosa stomach
45 chr17:43546800-43567200 Weak transcription Primary T helper naive cells from peripheral blood blood
46 chr17:43547000-43552200 Weak transcription Placenta Placenta
47 chr17:43547200-43552400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
48 chr17:43547200-43560200 Weak transcription HMEC breast
49 chr17:43547400-43552600 Weak transcription Primary T regulatory cells fromperipheralblood blood
50 chr17:43547400-43555200 Weak transcription NHEK skin

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Last update: Aug 31, 2015