The 2.0 version of rSNPBase

Variant report

Variant rs62065445
Chromosome Location chr17:43565840-43565841
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:100 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:43510800-43567200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr17:43523000-43567200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
3 chr17:43524400-43567000 Weak transcription Primary T killer memory cells from peripheral blood blood
4 chr17:43529000-43566600 Weak transcription Colon Smooth Muscle Colon
5 chr17:43540200-43566600 Weak transcription Primary T killer naive cells fromperipheralblood blood
6 chr17:43540200-43567200 Weak transcription ES-I3 Cell Line embryonic stem cell
7 chr17:43540200-43567200 Weak transcription GM12878-XiMat blood
8 chr17:43546800-43567200 Weak transcription Primary T helper naive cells from peripheral blood blood
9 chr17:43548200-43567600 Weak transcription Small Intestine intestine
10 chr17:43548400-43566600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
11 chr17:43548400-43567400 Weak transcription Psoas Muscle Psoas
12 chr17:43553000-43567200 Weak transcription Rectal Smooth Muscle rectum
13 chr17:43553800-43567200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
14 chr17:43554000-43566600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
15 chr17:43555200-43567200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
16 chr17:43555400-43567000 Weak transcription Gastric stomach
17 chr17:43555600-43566200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
18 chr17:43555600-43566800 Weak transcription Spleen Spleen
19 chr17:43555600-43567000 Weak transcription HepG2 liver
20 chr17:43555600-43567200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
21 chr17:43555600-43567200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
22 chr17:43555600-43567200 Weak transcription Fetal Muscle Leg muscle
23 chr17:43555600-43567200 Weak transcription Fetal Stomach stomach
24 chr17:43555600-43567200 Weak transcription Pancreas Pancrea
25 chr17:43555600-43567200 Weak transcription Stomach Smooth Muscle stomach
26 chr17:43555600-43567200 Weak transcription Thymus Thymus
27 chr17:43555600-43567400 Weak transcription H9 Cell Line embryonic stem cell
28 chr17:43555800-43566200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
29 chr17:43555800-43567200 Weak transcription Fetal Thymus thymus
30 chr17:43556000-43567200 Weak transcription Primary T cells from cord blood blood
31 chr17:43556000-43567200 Weak transcription Placenta Placenta
32 chr17:43556000-43567200 Weak transcription Right Ventricle heart
33 chr17:43556200-43566600 Weak transcription Primary T regulatory cells fromperipheralblood blood
34 chr17:43556200-43566600 Weak transcription Dnd41 blood
35 chr17:43556200-43567200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
36 chr17:43556800-43567400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
37 chr17:43560400-43567400 Weak transcription Fetal Muscle Trunk muscle
38 chr17:43560800-43567200 Weak transcription Colonic Mucosa Colon
39 chr17:43560800-43567200 Weak transcription Duodenum Mucosa Duodenum
40 chr17:43561000-43567600 Weak transcription Sigmoid Colon Sigmoid Colon
41 chr17:43561400-43567400 Weak transcription Left Ventricle heart
42 chr17:43561600-43566600 Weak transcription Primary hematopoietic stem cells blood
43 chr17:43562000-43566600 Weak transcription Rectal Mucosa Donor 29 rectum
44 chr17:43562000-43567200 Weak transcription Primary T helper naive cells fromperipheralblood blood
45 chr17:43562000-43567200 Weak transcription Primary T helper cells PMA-I stimulated --
46 chr17:43562000-43567200 Weak transcription Primary T helper cells fromperipheralblood blood
47 chr17:43563200-43566000 Weak transcription Primary T cells fromperipheralblood blood
48 chr17:43563200-43567200 Weak transcription Fetal Intestine Large intestine
49 chr17:43563800-43567000 Enhancers Primary monocytes fromperipheralblood blood
50 chr17:43564000-43566600 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived

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Last update: Aug 31, 2015