Variant report

Variant	rs62073706
Chromosome Location	chr17:16563552-16563553
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11868291	0.88[EUR][1000 genomes]
rs11870650	0.85[EUR][1000 genomes]
rs2058197	0.83[EUR][1000 genomes]
rs28419755	0.83[EUR][1000 genomes]
rs28704561	0.83[EUR][1000 genomes]
rs59771043	0.86[EUR][1000 genomes]
rs62072767	0.85[EUR][1000 genomes]
rs62072768	0.83[EUR][1000 genomes]
rs62072769	0.85[EUR][1000 genomes]
rs62072771	0.86[EUR][1000 genomes]
rs62072776	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62072777	0.88[EUR][1000 genomes]
rs62072778	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62072782	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62072783	1.00[EUR][1000 genomes]
rs62072785	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62072786	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62072787	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62072789	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62072791	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62072846	1.00[EUR][1000 genomes]
rs62072847	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62072856	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62072857	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62072858	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62072859	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62073662	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62073663	1.00[EUR][1000 genomes]
rs62073665	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62073667	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62073702	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62073703	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62073705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62073707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62073708	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62073709	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62073710	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7218473	0.83[EUR][1000 genomes]
rs7224237	1.00[EUR][1000 genomes]
rs73982008	0.86[EUR][1000 genomes]
rs8065062	0.86[EUR][1000 genomes]
rs8065749	0.81[EUR][1000 genomes]
rs9899944	0.83[EUR][1000 genomes]
rs9902115	0.88[EUR][1000 genomes]
rs9909271	0.88[EUR][1000 genomes]
rs9909921	0.88[EUR][1000 genomes]
rs9910496	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3330182	chr17:15652014-16569534	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
2	esv3446844	chr17:15654843-16572246	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
3	nsv1063764	chr17:16171649-16662914	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	120 gene(s)	inside rSNPs	diseases
4	nsv1058448	chr17:16389870-16926287	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
5	esv2758442	chr17:16527056-16817437	Active TSS Bivalent Enhancer ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	esv2758676	chr17:16527056-16817437	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
7	nsv427991	chr17:16527056-16817437	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
8	nsv907720	chr17:16557606-16758204	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
9	nsv962268	chr17:16559570-16566202	Enhancers Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
10	nsv978372	chr17:16559570-16587380	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16557400-16570000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr17:16557800-16566000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr17:16562000-16566600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr17:16563000-16567000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr17:16563400-16564400	Enhancers	NHEK	skin

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