Variant report

Variant	rs62088665
Chromosome Location	chr18:28863659-28863660
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 186 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:182)

rs_ID	r²[population]
rs10163619	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10164077	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10438909	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10438930	0.94[ASN][1000 genomes]
rs11081690	0.94[ASN][1000 genomes]
rs11081691	0.94[ASN][1000 genomes]
rs1154850	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1154851	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11659665	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11660608	0.94[ASN][1000 genomes]
rs11660638	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11661048	0.81[EUR][1000 genomes]
rs11661104	0.81[EUR][1000 genomes]
rs11663622	0.94[ASN][1000 genomes]
rs11663676	0.94[ASN][1000 genomes]
rs11663924	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11664596	0.84[EUR][1000 genomes]
rs11872734	0.94[ASN][1000 genomes]
rs11873223	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11873281	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11875510	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11875560	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12606722	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12607370	0.97[ASN][1000 genomes]
rs12957659	0.83[EUR][1000 genomes]
rs12958069	0.83[EUR][1000 genomes]
rs12958073	0.83[EUR][1000 genomes]
rs12958351	0.84[EUR][1000 genomes]
rs12959058	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12962355	0.97[ASN][1000 genomes]
rs12963302	0.97[ASN][1000 genomes]
rs12964422	0.83[EUR][1000 genomes]
rs12964443	0.83[EUR][1000 genomes]
rs12964744	0.82[EUR][1000 genomes]
rs12964748	0.82[EUR][1000 genomes]
rs12964839	0.83[EUR][1000 genomes]
rs12964907	0.83[EUR][1000 genomes]
rs12965148	0.82[EUR][1000 genomes]
rs12965177	0.83[EUR][1000 genomes]
rs12965803	0.83[EUR][1000 genomes]
rs12965829	0.82[EUR][1000 genomes]
rs12967407	0.94[ASN][1000 genomes]
rs1426310	0.97[ASN][1000 genomes]
rs1426311	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1460599	0.85[ASN][1000 genomes]
rs17658464	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1834582	0.97[ASN][1000 genomes]
rs1895902	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2007149	0.94[ASN][1000 genomes]
rs2042720	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2114269	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2162273	0.94[ASN][1000 genomes]
rs2162274	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2199301	0.94[ASN][1000 genomes]
rs2219582	0.94[ASN][1000 genomes]
rs2219583	0.94[ASN][1000 genomes]
rs28372393	0.84[EUR][1000 genomes]
rs28510667	0.84[EUR][1000 genomes]
rs28615832	0.84[EUR][1000 genomes]
rs28633353	0.84[EUR][1000 genomes]
rs2901124	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2901125	0.94[ASN][1000 genomes]
rs34187983	0.84[EUR][1000 genomes]
rs34212801	0.84[EUR][1000 genomes]
rs34248946	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs34301793	0.83[EUR][1000 genomes]
rs34530511	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34634416	0.84[EUR][1000 genomes]
rs34664857	0.84[EUR][1000 genomes]
rs34743470	0.83[EUR][1000 genomes]
rs35136508	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35220971	0.84[EUR][1000 genomes]
rs35223713	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35229932	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35257361	0.94[ASN][1000 genomes]
rs35257713	0.84[EUR][1000 genomes]
rs35287825	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35362621	0.84[EUR][1000 genomes]
rs35382145	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs35596545	0.84[EUR][1000 genomes]
rs35909227	0.84[EUR][1000 genomes]
rs4356544	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4408611	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4517864	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4539673	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4598984	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55776955	0.84[EUR][1000 genomes]
rs55778425	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55965644	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56088904	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56308568	0.84[EUR][1000 genomes]
rs62087700	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62087701	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62087702	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62087703	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62088675	0.81[EUR][1000 genomes]
rs62090169	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs62090401	0.84[EUR][1000 genomes]
rs6506903	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6506904	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6506912	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6506915	0.97[ASN][1000 genomes]
rs6506916	0.97[ASN][1000 genomes]
rs67014182	0.84[EUR][1000 genomes]
rs67550130	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7226461	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7227412	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7229763	0.81[EUR][1000 genomes]
rs7229799	0.82[EUR][1000 genomes]
rs7230092	0.81[EUR][1000 genomes]
rs7230461	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7231346	0.94[ASN][1000 genomes]
rs7231460	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7231775	0.81[EUR][1000 genomes]
rs7232206	0.83[EUR][1000 genomes]
rs7234662	0.97[ASN][1000 genomes]
rs7234854	0.97[ASN][1000 genomes]
rs7235354	0.97[ASN][1000 genomes]
rs7235384	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7235951	0.94[ASN][1000 genomes]
rs7235975	0.94[ASN][1000 genomes]
rs7236225	0.94[ASN][1000 genomes]
rs7236309	0.97[ASN][1000 genomes]
rs7236370	0.94[ASN][1000 genomes]
rs7237370	0.94[ASN][1000 genomes]
rs7237383	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7237419	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7239695	0.84[EUR][1000 genomes]
rs7240897	0.84[EUR][1000 genomes]
rs7241874	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7242742	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7243151	0.84[EUR][1000 genomes]
rs7243262	0.84[EUR][1000 genomes]
rs7243638	0.84[EUR][1000 genomes]
rs7243885	0.83[EUR][1000 genomes]
rs7243922	0.83[EUR][1000 genomes]
rs7243984	0.82[EUR][1000 genomes]
rs7244015	0.84[EUR][1000 genomes]
rs7244050	0.83[EUR][1000 genomes]
rs7244153	0.83[EUR][1000 genomes]
rs7244510	0.84[EUR][1000 genomes]
rs7245008	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7245063	0.81[EUR][1000 genomes]
rs72914749	0.84[EUR][1000 genomes]
rs765054	0.94[ASN][1000 genomes]
rs8087103	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8087410	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs8087621	0.97[ASN][1000 genomes]
rs8087786	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8088418	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs8088637	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8088973	0.84[EUR][1000 genomes]
rs8089598	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8089762	0.84[EUR][1000 genomes]
rs8091151	0.94[ASN][1000 genomes]
rs8091579	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs8091715	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8091847	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs8091871	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8091934	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs8092044	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs966376	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9944661	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9946611	0.84[EUR][1000 genomes]
rs9947296	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9947444	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9950209	0.94[ASN][1000 genomes]
rs9950622	0.94[ASN][1000 genomes]
rs9950769	0.84[EUR][1000 genomes]
rs9950949	0.84[EUR][1000 genomes]
rs9950971	0.84[EUR][1000 genomes]
rs9951016	0.84[EUR][1000 genomes]
rs9951341	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9954315	0.81[EUR][1000 genomes]
rs9955239	0.81[EUR][1000 genomes]
rs9956026	0.94[ASN][1000 genomes]
rs9957758	0.84[EUR][1000 genomes]
rs9959406	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9962740	0.94[ASN][1000 genomes]
rs9963626	0.84[EUR][1000 genomes]
rs9966267	0.81[EUR][1000 genomes]
rs9967293	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3360998	chr18:28693111-28881812	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1066692	chr18:28856066-29190505	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv543674	chr18:28856066-29190505	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	esv3422577	chr18:28862003-28881811	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28859000-28867600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr18:28861200-28869400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr18:28862600-28867600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr18:28863200-28864200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
5	chr18:28863200-28864800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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