Variant report

Variant	rs62090172
Chromosome Location	chr18:28914512-28914513
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10163619	0.85[EUR][1000 genomes]
rs10164077	0.85[EUR][1000 genomes]
rs10438909	0.80[EUR][1000 genomes]
rs10438930	0.80[EUR][1000 genomes]
rs11081690	0.85[EUR][1000 genomes]
rs11081691	0.85[EUR][1000 genomes]
rs1154850	0.85[EUR][1000 genomes]
rs1154851	0.85[EUR][1000 genomes]
rs11660608	0.85[EUR][1000 genomes]
rs11663622	0.85[EUR][1000 genomes]
rs11663676	0.85[EUR][1000 genomes]
rs11872734	0.85[EUR][1000 genomes]
rs11875510	0.85[EUR][1000 genomes]
rs11875560	0.85[EUR][1000 genomes]
rs12607370	0.80[EUR][1000 genomes]
rs12962355	0.80[EUR][1000 genomes]
rs12967407	0.85[EUR][1000 genomes]
rs1426310	0.80[EUR][1000 genomes]
rs1834582	0.80[EUR][1000 genomes]
rs2007149	0.85[EUR][1000 genomes]
rs2114269	0.85[EUR][1000 genomes]
rs2162272	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2162273	0.85[EUR][1000 genomes]
rs2199301	0.85[EUR][1000 genomes]
rs2219582	0.85[EUR][1000 genomes]
rs2219583	0.85[EUR][1000 genomes]
rs2303465	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2901124	0.85[EUR][1000 genomes]
rs2901125	0.85[EUR][1000 genomes]
rs34248946	0.84[EUR][1000 genomes]
rs35257361	0.85[EUR][1000 genomes]
rs35382145	0.85[EUR][1000 genomes]
rs4356544	0.80[EUR][1000 genomes]
rs4399610	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62090169	0.80[EUR][1000 genomes]
rs6506915	0.80[EUR][1000 genomes]
rs6506916	0.80[EUR][1000 genomes]
rs6506917	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7229263	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7231346	0.85[EUR][1000 genomes]
rs7234662	0.80[EUR][1000 genomes]
rs7234854	0.80[EUR][1000 genomes]
rs7235354	0.80[EUR][1000 genomes]
rs7235951	0.85[EUR][1000 genomes]
rs7235975	0.85[EUR][1000 genomes]
rs7236225	0.85[EUR][1000 genomes]
rs7236309	0.80[EUR][1000 genomes]
rs7236327	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7236370	0.85[EUR][1000 genomes]
rs7237370	0.85[EUR][1000 genomes]
rs7237383	0.85[EUR][1000 genomes]
rs7237419	0.85[EUR][1000 genomes]
rs765054	0.85[EUR][1000 genomes]
rs8087410	0.80[EUR][1000 genomes]
rs8087621	0.80[EUR][1000 genomes]
rs8088418	0.80[EUR][1000 genomes]
rs8091151	0.85[EUR][1000 genomes]
rs8091579	0.80[EUR][1000 genomes]
rs8091847	0.80[EUR][1000 genomes]
rs8091934	0.80[EUR][1000 genomes]
rs930963	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs977434	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9947296	0.80[EUR][1000 genomes]
rs9947444	0.80[EUR][1000 genomes]
rs9950209	0.85[EUR][1000 genomes]
rs9950622	0.85[EUR][1000 genomes]
rs9956026	0.85[EUR][1000 genomes]
rs9959406	0.80[EUR][1000 genomes]
rs9962740	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066692	chr18:28856066-29190505	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv543674	chr18:28856066-29190505	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv916545	chr18:28898800-29166364	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv909516	chr18:28910615-28946104	Active TSS ZNF genes & repeats Enhancers Strong transcription Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28899600-28927200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr18:28904800-28933800	Weak transcription	Esophagus	oesophagus
3	chr18:28913600-28925000	Weak transcription	Liver	Liver

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