The 2.0 version of rSNPBase

Variant report

Variant rs62093938
Chromosome Location chr18:29617013-29617014
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:71 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr18:29599600-29629600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr18:29600200-29617200 Weak transcription Lung lung
3 chr18:29600600-29620400 Weak transcription Rectal Mucosa Donor 31 rectum
4 chr18:29600600-29628400 Weak transcription Hela-S3 cervix
5 chr18:29600800-29632400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
6 chr18:29602000-29617200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
7 chr18:29602600-29628600 Weak transcription iPS-18 Cell Line embryonic stem cell
8 chr18:29602600-29664200 Weak transcription Brain Inferior Temporal Lobe brain
9 chr18:29602800-29617200 Weak transcription H9 Cell Line embryonic stem cell
10 chr18:29602800-29617200 Weak transcription HUES48 Cell Line embryonic stem cell
11 chr18:29602800-29617400 Weak transcription Sigmoid Colon Sigmoid Colon
12 chr18:29602800-29620600 Weak transcription Brain Angular Gyrus brain
13 chr18:29603600-29617200 Weak transcription Fetal Intestine Large intestine
14 chr18:29604600-29656000 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
15 chr18:29606600-29617800 Weak transcription Fetal Muscle Trunk muscle
16 chr18:29606800-29637000 Weak transcription Brain Anterior Caudate brain
17 chr18:29607800-29617200 Weak transcription Brain Substantia Nigra brain
18 chr18:29609800-29618400 Weak transcription Brain Hippocampus Middle brain
19 chr18:29609800-29628600 Weak transcription Small Intestine intestine
20 chr18:29610000-29617200 Weak transcription Primary B cells from peripheral blood blood
21 chr18:29610400-29619600 Weak transcription Ovary ovary
22 chr18:29611600-29628800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
23 chr18:29611800-29629000 Weak transcription Skeletal Muscle Female skeletal muscle
24 chr18:29612200-29617600 Weak transcription Rectal Smooth Muscle rectum
25 chr18:29613000-29617200 Enhancers Primary T killer naive cells fromperipheralblood blood
26 chr18:29613000-29627000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
27 chr18:29614000-29620800 Weak transcription Brain Cingulate Gyrus brain
28 chr18:29614400-29617200 Weak transcription Spleen Spleen
29 chr18:29614400-29617400 Weak transcription Fetal Intestine Small intestine
30 chr18:29615200-29648400 Weak transcription ES-I3 Cell Line embryonic stem cell
31 chr18:29615600-29620000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
32 chr18:29615600-29620600 Weak transcription Duodenum Smooth Muscle Duodenum
33 chr18:29615800-29628400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
34 chr18:29616000-29640200 Weak transcription Esophagus oesophagus
35 chr18:29616200-29628800 Weak transcription Gastric stomach
36 chr18:29616400-29617400 Weak transcription iPS-20b Cell Line embryonic stem cell
37 chr18:29616400-29617600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
38 chr18:29616600-29618400 Strong transcription iPS-15b Cell Line embryonic stem cell
39 chr18:29616800-29617200 Strong transcription Primary T cells fromperipheralblood blood
40 chr18:29616800-29617600 Strong transcription Primary T helper cells fromperipheralblood blood
41 chr18:29616800-29617800 Strong transcription Primary T killer memory cells from peripheral blood blood
42 chr18:29616800-29618400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
43 chr18:29616800-29618600 Genic enhancers Primary T helper naive cells from peripheral blood blood
44 chr18:29616800-29618800 Strong transcription Primary T cells from cord blood blood
45 chr18:29616800-29619000 Strong transcription Primary hematopoietic stem cells blood
46 chr18:29616800-29619000 Strong transcription Primary hematopoietic stem cells short term culture blood
47 chr18:29616800-29619000 Strong transcription Rectal Mucosa Donor 29 rectum
48 chr18:29616800-29619400 Strong transcription Breast Myoepithelial Primary Cells Breast
49 chr18:29616800-29619400 Strong transcription Primary T helper naive cells fromperipheralblood blood
50 chr18:29616800-29619400 Strong transcription Duodenum Mucosa Duodenum

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Last update: Aug 31, 2015