The 2.0 version of rSNPBase

Variant report

Variant rs62113309
Chromosome Location chr2:11896225-11896226
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:107 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:11888400-11916400 Weak transcription ES-WA7 Cell Line embryonic stem cell
2 chr2:11890400-11906400 Weak transcription Fetal Brain Male brain
3 chr2:11890600-11898600 Weak transcription HepG2 liver
4 chr2:11890600-11905800 Weak transcription Placenta Amnion Placenta Amnion
5 chr2:11891400-11897400 Weak transcription iPS-15b Cell Line embryonic stem cell
6 chr2:11891400-11903000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
7 chr2:11893800-11906400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
8 chr2:11894200-11903000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
9 chr2:11894400-11898200 Enhancers Skeletal Muscle Female skeletal muscle
10 chr2:11894400-11899000 Weak transcription Placenta Placenta
11 chr2:11894600-11896800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
12 chr2:11894600-11898800 Weak transcription Fetal Heart heart
13 chr2:11894600-11899200 Enhancers Primary T helper memory cells from peripheral blood 1 blood
14 chr2:11894600-11899400 Enhancers Primary B cells from peripheral blood blood
15 chr2:11894600-11899400 Enhancers Primary hematopoietic stem cells blood
16 chr2:11894600-11904600 Weak transcription Fetal Intestine Small intestine
17 chr2:11894800-11896600 Enhancers Skeletal Muscle Male skeletal muscle
18 chr2:11894800-11897600 Weak transcription Fetal Muscle Trunk muscle
19 chr2:11894800-11897800 Enhancers Primary B cells from cord blood blood
20 chr2:11894800-11898200 Enhancers Primary hematopoietic stem cells short term culture blood
21 chr2:11894800-11899200 Enhancers Primary T cells fromperipheralblood blood
22 chr2:11894800-11899200 Enhancers Primary T helper cells fromperipheralblood blood
23 chr2:11894800-11899400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
24 chr2:11894800-11903000 Weak transcription Aorta Aorta
25 chr2:11894800-11903200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
26 chr2:11895000-11897000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
27 chr2:11895000-11897000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
28 chr2:11895000-11897000 Weak transcription Primary T cells from cord blood blood
29 chr2:11895000-11897000 Weak transcription Pancreatic Islets Pancreatic Islet
30 chr2:11895000-11897200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
31 chr2:11895000-11897200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
32 chr2:11895000-11897200 Enhancers Primary T helper cells PMA-I stimulated --
33 chr2:11895000-11897200 Enhancers Primary T regulatory cells fromperipheralblood blood
34 chr2:11895000-11897200 Weak transcription Brain Hippocampus Middle brain
35 chr2:11895000-11897200 Weak transcription NHEK skin
36 chr2:11895000-11897400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
37 chr2:11895000-11897400 Weak transcription Thymus Thymus
38 chr2:11895000-11897800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
39 chr2:11895000-11898000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
40 chr2:11895000-11898000 Weak transcription HUES6 Cell Line embryonic stem cell
41 chr2:11895000-11898200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
42 chr2:11895000-11898800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
43 chr2:11895000-11898800 Weak transcription Fetal Adrenal Gland Adrenal Gland
44 chr2:11895000-11898800 Weak transcription Ovary ovary
45 chr2:11895000-11899000 Enhancers Primary T killer memory cells from peripheral blood blood
46 chr2:11895000-11899200 Enhancers Primary T helper memory cells from peripheral blood 2 blood
47 chr2:11895000-11899200 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
48 chr2:11895000-11901000 Weak transcription A549 lung
49 chr2:11895000-11901400 Weak transcription Brain Anterior Caudate brain
50 chr2:11895000-11902000 Weak transcription Left Ventricle heart

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Last update: Aug 31, 2015