Variant report

Variant	rs62133308
Chromosome Location	chr2:37661298-37661299
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10181043	0.85[ASN][1000 genomes]
rs12475384	0.81[ASN][1000 genomes]
rs12987182	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13002028	0.84[ASN][1000 genomes]
rs13014680	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13019075	0.87[ASN][1000 genomes]
rs13035644	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17020669	0.81[ASN][1000 genomes]
rs2216116	0.83[ASN][1000 genomes]
rs2373106	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2373107	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34105303	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34652606	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34658454	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4490163	0.83[ASN][1000 genomes]
rs4670705	0.81[ASN][1000 genomes]
rs4670713	0.83[ASN][1000 genomes]
rs4670719	0.89[ASN][1000 genomes]
rs6732454	0.81[ASN][1000 genomes]
rs71437580	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833814	chr2:37643132-37840247	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37660000-37661600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links