Variant report

Variant	rs621351
Chromosome Location	chr13:76366712-76366713
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs2585628	1.00[AMR][1000 genomes]
rs2761075	1.00[AMR][1000 genomes]
rs2761076	1.00[AMR][1000 genomes]
rs486860	1.00[AMR][1000 genomes]
rs516359	1.00[AMR][1000 genomes]
rs525890	1.00[AMR][1000 genomes]
rs527890	1.00[AMR][1000 genomes]
rs538884	1.00[AMR][1000 genomes]
rs545943	1.00[AMR][1000 genomes]
rs588500	1.00[AMR][1000 genomes]
rs592466	1.00[AMR][1000 genomes]
rs594666	1.00[AMR][1000 genomes]
rs596473	1.00[AMR][1000 genomes]
rs605536	1.00[AMR][1000 genomes]
rs606853	1.00[AMR][1000 genomes]
rs619523	1.00[AMR][1000 genomes]
rs624802	1.00[AMR][1000 genomes]
rs642894	1.00[AMR][1000 genomes]
rs645822	1.00[AMR][1000 genomes]
rs654431	1.00[AMR][1000 genomes]
rs696777	1.00[AMR][1000 genomes]
rs696778	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832646	chr13:76300428-76483102	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv2758333	chr13:76321610-76542003	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	esv2759950	chr13:76321610-76542003	Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76338800-76371000	Weak transcription	Fetal Thymus	thymus
2	chr13:76343400-76370800	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr13:76350000-76371000	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr13:76353400-76370600	Weak transcription	Primary T cells from cord blood	blood
5	chr13:76355600-76370800	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr13:76357000-76368400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr13:76358200-76370800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr13:76358200-76371400	Weak transcription	NHEK	skin
9	chr13:76360200-76367000	Genic enhancers	Osteobl	bone
10	chr13:76361600-76397800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr13:76361800-76377400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr13:76362000-76376600	Weak transcription	Primary hematopoietic stem cells	blood
13	chr13:76362600-76377000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr13:76363000-76377000	Weak transcription	GM12878-XiMat	blood
15	chr13:76363200-76370800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr13:76363200-76371000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr13:76363200-76372400	Weak transcription	HMEC	breast
18	chr13:76363200-76376400	Weak transcription	Esophagus	oesophagus
19	chr13:76363200-76381800	Weak transcription	Fetal Stomach	stomach
20	chr13:76363400-76371600	Weak transcription	Colonic Mucosa	Colon
21	chr13:76363600-76371400	Weak transcription	Small Intestine	intestine
22	chr13:76364200-76370200	Weak transcription	NH-A	brain
23	chr13:76364400-76367800	Enhancers	Placenta	Placenta
24	chr13:76364600-76366800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr13:76364600-76367400	Transcr. at gene 5' and 3'	HSMM	muscle
26	chr13:76364600-76385000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr13:76364800-76371600	Weak transcription	Fetal Muscle Trunk	muscle
28	chr13:76365000-76367400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr13:76365200-76367600	Enhancers	Fetal Intestine Large	intestine
30	chr13:76365400-76367200	Enhancers	Stomach Mucosa	stomach
31	chr13:76365400-76370800	Weak transcription	Fetal Muscle Leg	muscle
32	chr13:76365600-76367400	Enhancers	Rectal Mucosa Donor 31	rectum
33	chr13:76365800-76367000	Enhancers	Psoas Muscle	Psoas
34	chr13:76365800-76367400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr13:76365800-76367800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr13:76366000-76366800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr13:76366000-76366800	Enhancers	Duodenum Mucosa	Duodenum
38	chr13:76366000-76366800	Enhancers	Lung	lung
39	chr13:76366000-76366800	Enhancers	Pancreas	Pancrea
40	chr13:76366000-76366800	Enhancers	Sigmoid Colon	Sigmoid Colon
41	chr13:76366000-76367000	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr13:76366000-76367200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr13:76366000-76367200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr13:76366000-76367200	Enhancers	NHDF-Ad	bronchial
45	chr13:76366000-76367400	Enhancers	Rectal Mucosa Donor 29	rectum
46	chr13:76366000-76368000	Flanking Active TSS	HepG2	liver
47	chr13:76366200-76366800	Enhancers	Aorta	Aorta
48	chr13:76366200-76367000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
49	chr13:76366200-76367000	Enhancers	Gastric	stomach
50	chr13:76366200-76367200	Enhancers	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links