Variant report

Variant	rs62148983
Chromosome Location	chr2:33728654-33728655
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10495790	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12468183	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12468338	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12470632	0.83[ASN][1000 genomes]
rs17013131	0.87[EUR][1000 genomes]
rs17013132	0.87[EUR][1000 genomes]
rs17013153	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17013160	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17594787	0.83[EUR][1000 genomes]
rs17595807	1.00[AFR][1000 genomes]
rs62147155	0.87[EUR][1000 genomes]
rs62147157	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005435	chr2:33136117-33747159	Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv535624	chr2:33136117-33747159	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	esv1829750	chr2:33704194-33740571	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33710400-33775400	Weak transcription	Pancreas	Pancrea
2	chr2:33712200-33747600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr2:33719000-33730200	Enhancers	Primary B cells from peripheral blood	blood
4	chr2:33721600-33730000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr2:33724000-33729200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr2:33724000-33729400	Weak transcription	Brain Angular Gyrus	brain
7	chr2:33724000-33729600	Weak transcription	Brain Anterior Caudate	brain
8	chr2:33724600-33729600	Weak transcription	Right Ventricle	heart
9	chr2:33726400-33728800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr2:33726400-33729200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr2:33726600-33728800	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr2:33726800-33728800	Enhancers	Primary hematopoietic stem cells	blood
13	chr2:33727000-33737000	Weak transcription	Primary B cells from cord blood	blood
14	chr2:33727200-33729200	Weak transcription	Brain Cingulate Gyrus	brain
15	chr2:33727800-33733600	Enhancers	Brain Hippocampus Middle	brain
16	chr2:33728200-33729600	Weak transcription	GM12878-XiMat	blood
17	chr2:33728400-33729000	Weak transcription	Brain Substantia Nigra	brain
18	chr2:33728400-33732000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr2:33728400-33732600	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr2:33728600-33729000	Weak transcription	Fetal Heart	heart

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