Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12151780	0.98[ASN][1000 genomes]
rs12463538	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12464295	0.99[ASN][1000 genomes]
rs12468304	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12476767	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12478656	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13004942	0.80[ASN][1000 genomes]
rs1401296	0.88[ASN][1000 genomes]
rs1518759	0.88[ASN][1000 genomes]
rs1799808	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1967425	0.88[ASN][1000 genomes]
rs2069915	0.81[AMR][1000 genomes]
rs2069916	0.80[EUR][1000 genomes]
rs2069920	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2069921	0.80[ASN][1000 genomes]
rs2069924	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2069931	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2069933	0.88[ASN][1000 genomes]
rs4662729	0.86[ASN][1000 genomes]
rs4662730	0.88[ASN][1000 genomes]
rs5936	0.80[ASN][1000 genomes]
rs6710535	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6728362	0.88[ASN][1000 genomes]
rs6749002	0.94[ASN][1000 genomes]
rs6754772	0.91[ASN][1000 genomes]
rs6754999	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs971207	0.80[ASN][1000 genomes]
rs973760	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875014	chr2:128178415-128328375	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv519035	chr2:128195244-128210400	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv524607	chr2:128196424-128218364	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:128181400-128209800	Weak transcription	Right Atrium	heart
2	chr2:128196200-128211600	Weak transcription	Colonic Mucosa	Colon
3	chr2:128198400-128202400	Weak transcription	Liver	Liver

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