Variant report

Variant	rs62167107
Chromosome Location	chr2:134460575-134460576
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11884849	0.88[ASN][1000 genomes]
rs11888079	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12989658	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12993296	0.88[ASN][1000 genomes]
rs12993449	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12995146	0.88[ASN][1000 genomes]
rs12996062	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12998809	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12998999	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13007239	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13008209	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13011121	0.88[ASN][1000 genomes]
rs13013221	0.88[ASN][1000 genomes]
rs13013946	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13015979	0.88[ASN][1000 genomes]
rs13028951	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13032020	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13032581	0.88[ASN][1000 genomes]
rs13033059	0.88[ASN][1000 genomes]
rs13036190	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1374405	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1446752	0.88[ASN][1000 genomes]
rs1562348	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1584239	0.92[EUR][1000 genomes]
rs1867897	0.88[ASN][1000 genomes]
rs1869054	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34454875	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35961497	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36066383	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4256007	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4440017	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4536693	0.88[ASN][1000 genomes]
rs6716182	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6716309	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6726369	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6726463	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7568394	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7568496	0.88[ASN][1000 genomes]
rs7574116	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9917166	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003624	chr2:134126928-134583203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1006101	chr2:134263288-134973917	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1013713	chr2:134322236-134644574	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv535931	chr2:134322236-134644574	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv3490502	chr2:134459582-134461580	Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv2606759	chr2:134459606-134461251	Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv5507	chr2:134460006-134460791	Weak transcription	n/a	n/a	inside rSNPs	diseases
8	esv2056503	chr2:134460076-134460773	Weak transcription	n/a	n/a	inside rSNPs	diseases
9	esv3458367	chr2:134460157-134460675	Weak transcription	n/a	n/a	inside rSNPs	diseases
10	esv3490504	chr2:134460174-134460682	Weak transcription	n/a	n/a	inside rSNPs	diseases
11	esv3490506	chr2:134460177-134460654	Weak transcription	n/a	n/a	inside rSNPs	diseases
12	esv3458365	chr2:134460182-134460646	Weak transcription	n/a	n/a	inside rSNPs	diseases
13	esv3490499	chr2:134460191-134460627	Weak transcription	n/a	n/a	inside rSNPs	diseases
14	esv3490500	chr2:134460194-134460608	Weak transcription	n/a	n/a	inside rSNPs	diseases
15	esv4172	chr2:134460196-134460732	Weak transcription	n/a	n/a	inside rSNPs	diseases
16	esv3458364	chr2:134460203-134460641	Weak transcription	n/a	n/a	inside rSNPs	diseases
17	esv3490505	chr2:134460206-134460621	Weak transcription	n/a	n/a	inside rSNPs	diseases
18	esv3458366	chr2:134460213-134460599	Weak transcription	n/a	n/a	inside rSNPs	diseases
19	esv3490503	chr2:134460225-134460616	Weak transcription	n/a	n/a	inside rSNPs	diseases
20	esv3432684	chr2:134460226-134460591	Weak transcription	n/a	n/a	inside rSNPs	diseases
21	esv3458362	chr2:134460250-134460577	Weak transcription	n/a	n/a	inside rSNPs	diseases
22	esv3458368	chr2:134460265-134460587	Weak transcription	n/a	n/a	inside rSNPs	diseases
23	esv3490509	chr2:134460265-134460587	Weak transcription	n/a	n/a	inside rSNPs	diseases
24	esv1137533	chr2:134460279-134460586	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:134460200-134463000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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