Variant report

Variant	rs62167713
Chromosome Location	chr2:56028084-56028085
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:56026426..56029048-chr2:56036934..56038666,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10496051	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10496052	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11125601	0.91[ASN][1000 genomes]
rs11125602	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11125603	0.97[ASN][1000 genomes]
rs11125606	0.84[AMR][1000 genomes]
rs11888377	0.82[EUR][1000 genomes]
rs11893573	0.86[EUR][1000 genomes]
rs12464737	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12472893	0.91[ASN][1000 genomes]
rs12615158	0.92[AMR][1000 genomes]
rs1346782	0.97[ASN][1000 genomes]
rs1346789	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1346794	0.82[EUR][1000 genomes]
rs1430202	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17047234	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17369648	0.83[AMR][1000 genomes]
rs1946545	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1985163	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2009262	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3791675	0.85[AMR][1000 genomes]
rs3791679	0.89[AMR][1000 genomes]
rs4146921	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4146922	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4347871	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58027672	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58680090	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59556444	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59985551	0.86[AMR][1000 genomes]
rs62164463	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62167688	0.82[EUR][1000 genomes]
rs62167689	0.82[EUR][1000 genomes]
rs6545522	0.98[ASN][1000 genomes]
rs6724369	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6752931	0.81[EUR][1000 genomes]
rs732132	0.83[AMR][1000 genomes]
rs7560657	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7563032	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7574127	0.82[AMR][1000 genomes]
rs7590753	0.82[EUR][1000 genomes]
rs7591694	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9753383	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531374	chr2:55653723-56299784	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56027800-56028200	Flanking Active TSS	A549	lung
2	chr2:56027800-56029600	Enhancers	Hela-S3	cervix
3	chr2:56027800-56029800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr2:56028000-56028200	Enhancers	Esophagus	oesophagus
5	chr2:56028000-56029800	Enhancers	Fetal Brain Female	brain
6	chr2:56028000-56030000	Enhancers	Fetal Brain Male	brain

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