Variant report

Variant	rs62170331
Chromosome Location	chr2:77154735-77154736
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11901979	0.94[EUR][1000 genomes]
rs17333276	0.80[AMR][1000 genomes]
rs17333303	0.80[AMR][1000 genomes]
rs17333383	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17333578	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17333696	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17333850	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17405724	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1929454	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56161148	0.80[AMR][1000 genomes]
rs62170328	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62170329	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62170330	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62170332	1.00[EUR][1000 genomes]
rs62170336	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62170337	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62170339	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62173110	0.80[AMR][1000 genomes]
rs6715191	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72823112	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs953855	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874322	chr2:77031247-77209750	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv2752990	chr2:77038541-77217310	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv874324	chr2:77048896-77201916	Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv874327	chr2:77085752-77209750	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv874328	chr2:77096124-77196122	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv874329	chr2:77096124-77209750	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	esv1819739	chr2:77103474-77162163	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv874330	chr2:77103719-77209750	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv834266	chr2:77120236-77287504	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv949670	chr2:77125218-77712607	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:77146600-77167400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:77154600-77155800	Enhancers	Fetal Brain Male	brain

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