Variant report

Variant	rs62180205
Chromosome Location	chr2:182116725-182116726
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10177832	0.81[EUR][1000 genomes]
rs10197170	0.90[ASN][1000 genomes]
rs1030964	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11889566	0.81[EUR][1000 genomes]
rs13008615	0.81[EUR][1000 genomes]
rs13035390	0.81[EUR][1000 genomes]
rs1371616	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1595812	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17365432	0.83[ASN][1000 genomes]
rs1899037	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1946895	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2033878	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4233797	0.81[EUR][1000 genomes]
rs4666738	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4666739	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4667158	0.81[EUR][1000 genomes]
rs4667162	0.81[EUR][1000 genomes]
rs56118925	0.88[ASN][1000 genomes]
rs62180206	0.94[ASN][1000 genomes]
rs62180233	0.89[ASN][1000 genomes]
rs62180234	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62180242	0.87[ASN][1000 genomes]
rs62180243	0.87[ASN][1000 genomes]
rs62180246	0.87[ASN][1000 genomes]
rs62180252	0.83[ASN][1000 genomes]
rs6706833	0.90[ASN][1000 genomes]
rs73034937	0.83[ASN][1000 genomes]
rs7355504	0.81[EUR][1000 genomes]
rs7566314	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs976461	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431824	chr2:181946115-182118559	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1005870	chr2:181968637-182921439	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv536063	chr2:181968637-182921439	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv1002647	chr2:182078521-182392273	Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
5	nsv536064	chr2:182078521-182392273	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182107000-182117400	Weak transcription	Dnd41	blood
2	chr2:182107400-182117400	Weak transcription	Fetal Thymus	thymus
3	chr2:182107400-182127600	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr2:182108000-182117200	Weak transcription	Primary T cells from cord blood	blood
5	chr2:182108000-182117200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr2:182108000-182117200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr2:182108200-182117200	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr2:182108400-182117000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr2:182115000-182121400	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr2:182115400-182118600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
11	chr2:182116200-182117400	Weak transcription	Liver	Liver
12	chr2:182116400-182117200	Weak transcription	Thymus	Thymus
13	chr2:182116400-182118600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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