Variant report

Variant	rs621826
Chromosome Location	chr11:56240305-56240306
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr11:56240213-56240354	HepG2	liver:	n/a	chr11:56240268-56240279

Variant related genes	Relation type
OR5M3	TF binding region

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10896227	0.91[ASN][1000 genomes]
rs10896325	0.96[ASN][1000 genomes]
rs10896345	0.96[ASN][1000 genomes]
rs11227964	0.88[ASN][1000 genomes]
rs12277883	0.96[ASN][1000 genomes]
rs12285921	0.93[ASN][1000 genomes]
rs12786642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1573512	0.96[ASN][1000 genomes]
rs1945228	0.96[ASN][1000 genomes]
rs2128132	0.93[ASN][1000 genomes]
rs2220001	0.91[ASN][1000 genomes]
rs34434887	0.96[ASN][1000 genomes]
rs4420287	0.96[ASN][1000 genomes]
rs4938829	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4939033	0.84[ASN][1000 genomes]
rs4939037	0.96[ASN][1000 genomes]
rs4939054	0.94[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs594113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs594568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs597016	0.89[ASN][1000 genomes]
rs597031	0.86[ASN][1000 genomes]
rs597045	0.89[ASN][1000 genomes]
rs597102	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs610822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs612885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs615231	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs624412	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs634955	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs637202	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs638801	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs639419	0.89[ASN][1000 genomes]
rs640953	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs647027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs647058	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs647402	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs652537	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6591233	0.93[ASN][1000 genomes]
rs6591310	0.96[ASN][1000 genomes]
rs660788	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs663964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs669453	0.99[ASN][1000 genomes]
rs672711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs675120	1.00[ASN][1000 genomes]
rs675991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs680490	0.97[ASN][1000 genomes]
rs683539	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7105808	0.96[ASN][1000 genomes]
rs7116573	0.96[ASN][1000 genomes]
rs7126732	0.96[ASN][1000 genomes]
rs7131637	0.95[ASN][1000 genomes]
rs7940239	0.93[ASN][1000 genomes]
rs871301	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050024	chr11:55900482-56518943	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
2	nsv497854	chr11:55917298-56537994	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
3	nsv971949	chr11:56126625-56344170	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases
4	nsv1046487	chr11:56228761-56310644	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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