Variant report

Variant	rs62187972
Chromosome Location	chr2:213525117-213525118
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10171052	1.00[ASN][1000 genomes]
rs10179457	1.00[ASN][1000 genomes]
rs10179622	1.00[ASN][1000 genomes]
rs10185470	1.00[ASN][1000 genomes]
rs10195898	1.00[ASN][1000 genomes]
rs10204755	1.00[ASN][1000 genomes]
rs10210112	1.00[ASN][1000 genomes]
rs10211380	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13384047	1.00[ASN][1000 genomes]
rs13384253	1.00[ASN][1000 genomes]
rs13400701	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13401993	1.00[ASN][1000 genomes]
rs13402119	1.00[ASN][1000 genomes]
rs13404602	1.00[ASN][1000 genomes]
rs13404790	1.00[ASN][1000 genomes]
rs13405155	1.00[ASN][1000 genomes]
rs13418175	1.00[ASN][1000 genomes]
rs13418412	1.00[ASN][1000 genomes]
rs13424220	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1987801	1.00[ASN][1000 genomes]
rs28852185	1.00[ASN][1000 genomes]
rs28860549	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4331450	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4574061	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56159667	1.00[ASN][1000 genomes]
rs56314123	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6435718	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6435720	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6720790	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6754237	1.00[ASN][1000 genomes]
rs72933024	1.00[ASN][1000 genomes]
rs72933076	1.00[ASN][1000 genomes]
rs72949047	1.00[ASN][1000 genomes]
rs72949055	1.00[ASN][1000 genomes]
rs7591655	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948878	chr2:213345197-213534298	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213525000-213525400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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