Variant report

Variant	rs62228512
Chromosome Location	chr3:25081075-25081076
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10510556	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13327067	0.83[EUR][1000 genomes]
rs1603974	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17515260	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17515622	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17787525	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17787531	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62228513	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62228516	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62228518	0.87[EUR][1000 genomes]
rs62228519	0.87[EUR][1000 genomes]
rs62228520	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62228521	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62228538	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62228539	0.85[EUR][1000 genomes]
rs62228543	0.80[EUR][1000 genomes]
rs7652292	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs949641	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834644	chr3:24936987-25112610	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv589955	chr3:24987823-25113358	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25070000-25086600	Weak transcription	Left Ventricle	heart
2	chr3:25074200-25083400	Weak transcription	Right Atrium	heart
3	chr3:25075200-25086600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:25078200-25081400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr3:25079200-25086600	Weak transcription	Fetal Muscle Leg	muscle
6	chr3:25079400-25083400	Weak transcription	Fetal Heart	heart
7	chr3:25079400-25086800	Weak transcription	Aorta	Aorta
8	chr3:25079400-25088400	Weak transcription	Adipose Nuclei	Adipose
9	chr3:25080000-25089000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:25080600-25081400	Enhancers	Psoas Muscle	Psoas
11	chr3:25080600-25086600	Weak transcription	Colon Smooth Muscle	Colon
12	chr3:25080800-25085200	Weak transcription	Rectal Smooth Muscle	rectum
13	chr3:25080800-25086600	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr3:25080800-25086600	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr3:25081000-25082200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr3:25081000-25083600	Weak transcription	Fetal Lung	lung
17	chr3:25081000-25085600	Weak transcription	Fetal Stomach	stomach
18	chr3:25081000-25086000	Weak transcription	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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