Variant report

Variant	rs622346
Chromosome Location	chr1:78997461-78997462
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12738132	0.93[EUR][1000 genomes]
rs12738139	0.93[EUR][1000 genomes]
rs33966768	0.93[EUR][1000 genomes]
rs34012237	0.93[EUR][1000 genomes]
rs35660242	0.93[EUR][1000 genomes]
rs3766335	0.92[EUR][1000 genomes]
rs3766344	0.80[CEU][hapmap]
rs473027	0.80[CEU][hapmap]
rs501078	0.81[CEU][hapmap]
rs668005	0.80[CEU][hapmap]
rs67840329	0.93[EUR][1000 genomes]
rs7543738	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871835	chr1:78528803-79501129	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv870807	chr1:78867347-79032598	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv871959	chr1:78992179-78999796	Strong transcription Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
4	nsv870919	chr1:78993841-79010670	Enhancers Strong transcription Weak transcription Genic enhancers	miRNA target site	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:78993200-79002000	Weak transcription	NHDF-Ad	bronchial
2	chr1:78994000-79002000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr1:78995800-78998000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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