Variant report

Variant	rs62236020
Chromosome Location	chr3:20897189-20897190
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1078333	0.83[EUR][1000 genomes]
rs11128977	0.82[EUR][1000 genomes]
rs11710447	0.84[ASN][1000 genomes]
rs1391857	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1499008	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2366542	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4858274	0.83[EUR][1000 genomes]
rs4858276	0.81[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs4858277	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55912973	0.84[EUR][1000 genomes]
rs62236016	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876598	chr3:20242143-20970042	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv999025	chr3:20738244-21042249	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv834629	chr3:20878902-21057592	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1831300	chr3:20886763-20919920	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv1850674	chr3:20886763-20919920	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv1849209	chr3:20895742-20897817	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
7	esv1832445	chr3:20895742-20898944	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
8	esv1844333	chr3:20895742-20898944	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
9	esv1851531	chr3:20895742-20898944	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
10	esv1826380	chr3:20895742-20970042	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	esv15448	chr3:20895910-20897883	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
12	nsv589868	chr3:20896020-20897703	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
13	esv1845605	chr3:20896020-20897817	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
14	nsv589869	chr3:20896124-20897598	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
15	nsv589870	chr3:20896124-20897703	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
16	esv1838763	chr3:20896124-20897817	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
17	nsv589871	chr3:20896124-20897817	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
18	nsv589872	chr3:20896235-20897309	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
19	esv1817347	chr3:20896235-20897703	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
20	nsv589873	chr3:20896235-20897703	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
21	esv1792329	chr3:20896235-20897817	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
22	nsv589874	chr3:20896349-20897430	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
23	nsv589875	chr3:20896349-20897598	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
24	nsv589876	chr3:20896349-20897703	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
25	nsv589877	chr3:20896458-20897703	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
26	nsv589878	chr3:20896568-20897703	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
27	nsv589879	chr3:20896788-20897703	Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:20895600-20899600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:20895800-20899200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr3:20895800-20899400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:20895800-20899400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr3:20895800-20899600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr3:20895800-20901800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr3:20895800-20901800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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