Variant report

Variant	rs62265363
Chromosome Location	chr3:81455569-81455570
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13096967	0.86[ASN][1000 genomes]
rs17018889	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17018891	0.96[ASN][1000 genomes]
rs276106	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35724468	0.85[ASN][1000 genomes]
rs35959610	0.85[ASN][1000 genomes]
rs62265369	0.86[ASN][1000 genomes]
rs9837999	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934018	chr3:81413060-81655338	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv933756	chr3:81413060-81754738	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1003217	chr3:81435044-81752521	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81455000-81455800	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr3:81455200-81455600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr3:81455200-81455800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr3:81455200-81456000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr3:81455400-81455800	Enhancers	Cortex derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links