Variant report

Variant	rs62265377
Chromosome Location	chr3:81493763-81493764
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13434306	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1677057	0.87[EUR][1000 genomes]
rs28367881	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62265374	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62265376	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9309871	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs968778	0.87[EUR][1000 genomes]
rs973689	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9822115	0.84[EUR][1000 genomes]
rs9843238	0.88[EUR][1000 genomes]
rs9847959	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934018	chr3:81413060-81655338	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv933756	chr3:81413060-81754738	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1003217	chr3:81435044-81752521	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81486800-81503200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:81491400-81497800	Enhancers	Osteobl	bone
3	chr3:81491800-81493800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr3:81491800-81494400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr3:81492000-81493800	Enhancers	Adipose Nuclei	Adipose
6	chr3:81492000-81494000	Enhancers	Muscle Satellite Cultured Cells	--
7	chr3:81492000-81494600	Enhancers	NHDF-Ad	bronchial
8	chr3:81492000-81499600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:81492200-81493800	Enhancers	HSMM	muscle
10	chr3:81492200-81493800	Enhancers	NHEK	skin
11	chr3:81492400-81493800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr3:81492400-81493800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr3:81492400-81493800	Enhancers	HMEC	breast
14	chr3:81492800-81500400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr3:81493000-81493800	Enhancers	NHLF	lung
16	chr3:81493200-81493800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr3:81493400-81493800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr3:81493400-81493800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr3:81493400-81494400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr3:81493600-81493800	Enhancers	A549	lung
21	chr3:81493600-81503000	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links