Variant report
| Variant | rs62265686 |
|---|---|
| Chromosome Location | chr3:81979733-81979734 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs13313910 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs13314208 | 0.81[ASN][1000 genomes] |
| rs13325804 | 0.81[ASN][1000 genomes] |
| rs13326960 | 0.81[ASN][1000 genomes] |
| rs13327783 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs17479347 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs34665337 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62265681 | 0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs62265683 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs62265684 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs62265712 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6548778 | 0.85[EUR][1000 genomes] |
| rs6787635 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7633528 | 0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7636208 | 0.81[ASN][1000 genomes] |
| rs9814843 | 0.81[ASN][1000 genomes] |
| rs9816203 | 0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs9833851 | 0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs9835279 | 0.87[ASN][1000 genomes] |
| rs9859620 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs9865893 | 0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs9875335 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs9985397 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv999992 | chr3:81693662-82015969 | Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
| 2 | nsv536605 | chr3:81693662-82015969 | Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:81977800-81981200 | Enhancers | Fetal Adrenal Gland | Adrenal Gland |
