Variant report

Variant	rs62267150
Chromosome Location	chr3:81866613-81866614
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs13314900	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1404296	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1851922	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1851924	0.82[EUR][1000 genomes]
rs1973802	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2315967	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2316043	0.82[EUR][1000 genomes]
rs2680275	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2680276	0.91[EUR][1000 genomes]
rs2691082	0.85[EUR][1000 genomes]
rs28553548	0.90[EUR][1000 genomes]
rs28668209	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3772886	0.91[EUR][1000 genomes]
rs57555994	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59419728	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62265681	0.90[EUR][1000 genomes]
rs62267115	0.92[EUR][1000 genomes]
rs6548778	0.90[EUR][1000 genomes]
rs6768673	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6778413	0.82[EUR][1000 genomes]
rs6785740	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6791629	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6798822	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6804453	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6804613	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6804697	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7611917	0.82[EUR][1000 genomes]
rs7633528	0.90[EUR][1000 genomes]
rs7634830	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7644425	0.82[EUR][1000 genomes]
rs9812141	0.82[EUR][1000 genomes]
rs9812505	0.82[EUR][1000 genomes]
rs9813371	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9816203	0.90[EUR][1000 genomes]
rs9816946	0.82[EUR][1000 genomes]
rs9820490	0.91[EUR][1000 genomes]
rs9821222	0.80[EUR][1000 genomes]
rs9825400	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9826933	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9827558	0.82[EUR][1000 genomes]
rs9831301	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9831360	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9833851	0.91[EUR][1000 genomes]
rs9835279	0.85[EUR][1000 genomes]
rs9838598	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9851559	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9863322	0.92[EUR][1000 genomes]
rs9870979	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9874754	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949545	chr3:81523898-81893929	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv999992	chr3:81693662-82015969	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv536605	chr3:81693662-82015969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81852400-81872200	Weak transcription	Left Ventricle	heart
2	chr3:81864600-81867600	Flanking Active TSS	Dnd41	blood
3	chr3:81864800-81867000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:81865000-81867400	Enhancers	Fetal Thymus	thymus
5	chr3:81865200-81866800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr3:81865200-81867000	Enhancers	Liver	Liver
7	chr3:81865400-81866800	Enhancers	NHDF-Ad	bronchial
8	chr3:81865400-81867000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr3:81865600-81866800	Flanking Active TSS	GM12878-XiMat	blood
10	chr3:81866000-81867200	Enhancers	Pancreas	Pancrea
11	chr3:81866200-81866800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:81866200-81866800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr3:81866200-81867400	Enhancers	Thymus	Thymus
14	chr3:81866200-81867600	Enhancers	Primary T cells from cord blood	blood
15	chr3:81866400-81866800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr3:81866400-81869000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr3:81866400-81872400	Weak transcription	Psoas Muscle	Psoas
18	chr3:81866600-81871000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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