Variant report

Variant	rs62267390
Chromosome Location	chr3:143644067-143644068
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:143643732..143645627-chr3:143646287..143648927,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10513234	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13064130	0.91[ASN][1000 genomes]
rs1466941	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17602500	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1992093	0.95[ASN][1000 genomes]
rs2279856	0.93[ASN][1000 genomes]
rs2885197	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34038325	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34071449	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34402874	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35072578	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35211123	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35362423	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35692092	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35716467	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4315684	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4446205	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4535221	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4563409	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59287916	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60505453	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6440210	0.81[ASN][1000 genomes]
rs6768153	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs723491	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877568	chr3:143621140-143992630	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv3365190	chr3:143642195-143925886	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143637800-143647000	Enhancers	Primary B cells from peripheral blood	blood
2	chr3:143640800-143644800	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr3:143642800-143645600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:143643200-143644200	Flanking Active TSS	GM12878-XiMat	blood
5	chr3:143644000-143645400	Enhancers	Primary hematopoietic stem cells	blood
6	chr3:143644000-143645400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr3:143644000-143646000	Enhancers	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links