Variant report

Variant	rs62271853
Chromosome Location	chr3:145273872-145273873
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11706858	0.82[AMR][1000 genomes]
rs11916198	0.82[EUR][1000 genomes]
rs11921424	0.82[EUR][1000 genomes]
rs11927995	0.82[EUR][1000 genomes]
rs12633376	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1481067	0.82[EUR][1000 genomes]
rs1481068	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1609197	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17236061	0.82[EUR][1000 genomes]
rs17825831	0.82[EUR][1000 genomes]
rs17825849	0.82[EUR][1000 genomes]
rs17825861	0.82[EUR][1000 genomes]
rs34539099	0.80[EUR][1000 genomes]
rs3915273	0.85[EUR][1000 genomes]
rs4095734	0.85[EUR][1000 genomes]
rs4340657	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4368449	0.82[EUR][1000 genomes]
rs55643920	0.82[EUR][1000 genomes]
rs55825652	0.81[EUR][1000 genomes]
rs56241883	0.87[EUR][1000 genomes]
rs56250637	0.82[EUR][1000 genomes]
rs56741139	0.82[EUR][1000 genomes]
rs58536958	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62271829	0.82[EUR][1000 genomes]
rs62271830	0.82[EUR][1000 genomes]
rs62271831	0.82[EUR][1000 genomes]
rs62271832	0.82[EUR][1000 genomes]
rs62271845	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62271846	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62271848	0.85[EUR][1000 genomes]
rs62271850	0.86[EUR][1000 genomes]
rs6792889	0.82[EUR][1000 genomes]
rs6807979	0.82[EUR][1000 genomes]
rs73872252	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73872259	0.85[EUR][1000 genomes]
rs73872262	0.86[EUR][1000 genomes]
rs7428114	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877584	chr3:144903957-145833232	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv877587	chr3:144949453-145355433	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv1839695	chr3:145225110-145324049	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:145264800-145274200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr3:145273600-145274000	Active TSS	H9 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links