Variant report
| Variant | rs62278991 |
|---|---|
| Chromosome Location | chr3:161843643-161843644 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs11919496 | 0.86[ASN][1000 genomes] |
| rs12486041 | 0.94[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12496458 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12631780 | 0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1397232 | 0.83[ASN][1000 genomes] |
| rs1510326 | 0.87[ASN][1000 genomes] |
| rs16835297 | 0.87[ASN][1000 genomes] |
| rs2063359 | 0.87[ASN][1000 genomes] |
| rs2063360 | 0.84[ASN][1000 genomes] |
| rs2063361 | 0.84[ASN][1000 genomes] |
| rs2136711 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2405281 | 0.87[ASN][1000 genomes] |
| rs57135470 | 0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs62278993 | 0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7648209 | 0.84[ASN][1000 genomes] |
| rs9867116 | 0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv460919 | chr3:161799090-162094430 | Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv592144 | chr3:161799090-162094430 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv877713 | chr3:161807012-161847016 | Enhancers Weak transcription Active TSS | n/a | n/a | inside rSNPs | diseases |
| 4 | nsv877714 | chr3:161807012-161854219 | Enhancers Flanking Active TSS Weak transcription Active TSS | n/a | n/a | inside rSNPs | diseases |
| 5 | nsv877715 | chr3:161807012-161862628 | Enhancers Weak transcription Flanking Active TSS Active TSS | n/a | n/a | inside rSNPs | diseases |
| 6 | nsv877716 | chr3:161817368-161847016 | Enhancers Weak transcription Active TSS | n/a | n/a | inside rSNPs | diseases |
| 7 | esv2753414 | chr3:161826690-161935978 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 8 | nsv877717 | chr3:161827760-161864213 | Enhancers Active TSS Flanking Active TSS Weak transcription | n/a | n/a | inside rSNPs | n/a |
| 9 | nsv877718 | chr3:161829492-161878713 | Weak transcription Enhancers Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:161843400-161843800 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
| 2 | chr3:161843400-161844000 | Enhancers | Fetal Heart | heart |
