Variant report

Variant	rs62301679
Chromosome Location	chr4:48061654-48061655
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10938519	0.85[EUR][1000 genomes]
rs11942098	0.89[ASN][1000 genomes]
rs12646088	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12647931	0.91[ASN][1000 genomes]
rs17608481	0.89[EUR][1000 genomes]
rs17654847	0.89[EUR][1000 genomes]
rs17654859	0.89[EUR][1000 genomes]
rs3805186	0.89[ASN][1000 genomes]
rs56001502	0.85[EUR][1000 genomes]
rs59276467	0.85[EUR][1000 genomes]
rs60653952	0.90[EUR][1000 genomes]
rs62300323	0.80[EUR][1000 genomes]
rs62301680	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62301686	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6447615	0.94[ASN][1000 genomes]
rs6820083	0.90[EUR][1000 genomes]
rs73244479	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs875179	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447039	chr4:47822266-48285222	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:48060000-48061800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:48060400-48061800	Enhancers	Primary T cells from cord blood	blood
3	chr4:48060600-48062000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr4:48060800-48061800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr4:48061000-48061800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:48061000-48061800	Enhancers	Primary T cells fromperipheralblood	blood
7	chr4:48061000-48062000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr4:48061200-48061800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr4:48061200-48075200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr4:48061400-48068200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr4:48061600-48062000	Enhancers	Placenta	Placenta
12	chr4:48061600-48068600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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