Variant report

Variant	rs62309349
Chromosome Location	chr4:48204221-48204222
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:48204159..48206959-chr4:48343162..48344804,3	K562	blood:
2	chr4:48203930..48205918-chr4:48223677..48225744,2	K562	blood:
3	chr4:48199323..48202790-chr4:48204123..48207429,4	K562	blood:

Variant related genes	Relation type
ENSG00000109171	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1355219	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1355220	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1396877	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17655303	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1912163	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1912164	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2055803	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2457417	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2664026	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2664036	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2664039	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2704408	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2704414	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3062075	0.83[ASN][1000 genomes]
rs4695361	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55885170	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56156164	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56363516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56381082	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62309333	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6834565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447039	chr4:47822266-48285222	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv482316	chr4:48151953-48338746	Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	esv2763359	chr4:48189710-48290233	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:48190400-48222000	Weak transcription	Fetal Intestine Small	intestine
2	chr4:48190600-48207200	Weak transcription	Spleen	Spleen
3	chr4:48195000-48208200	Enhancers	Primary B cells from peripheral blood	blood
4	chr4:48196200-48207200	Weak transcription	Lung	lung
5	chr4:48198200-48207200	Weak transcription	Pancreas	Pancrea
6	chr4:48199000-48205400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr4:48199400-48205200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr4:48200200-48204800	Weak transcription	Primary B cells from cord blood	blood
9	chr4:48200200-48212400	Weak transcription	Duodenum Mucosa	Duodenum
10	chr4:48200400-48205400	Weak transcription	Left Ventricle	heart
11	chr4:48200400-48205800	Weak transcription	Right Ventricle	heart
12	chr4:48200600-48204800	Enhancers	GM12878-XiMat	blood
13	chr4:48202000-48205400	Enhancers	K562	blood
14	chr4:48202200-48210000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr4:48203000-48205200	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr4:48203800-48204600	Weak transcription	Primary hematopoietic stem cells	blood
17	chr4:48203800-48212600	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr4:48204000-48204400	Enhancers	Placenta	Placenta
19	chr4:48204000-48206000	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr4:48204000-48206800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr4:48204000-48206800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr4:48204200-48204800	Weak transcription	Primary monocytes fromperipheralblood	blood

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