Variant report
| Variant | rs62309366 |
|---|---|
| Chromosome Location | chr4:48295042-48295043 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
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rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs11723080 | 0.91[EUR][1000 genomes] |
| rs11947400 | 0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1812667 | 0.82[AMR][1000 genomes] |
| rs2271265 | 0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs309887 | 0.95[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs4695369 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs55784928 | 0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs55860639 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs62309367 | 0.91[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs62309371 | 0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs62309372 | 0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs62309393 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs62309398 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs62309399 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs62309400 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs62309401 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs62309402 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs62311477 | 0.82[AMR][1000 genomes] |
| rs62311483 | 0.89[AMR][1000 genomes] |
| rs6833004 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv482316 | chr4:48151953-48338746 | Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 22 gene(s) | inside rSNPs | diseases |
| 2 | nsv1006610 | chr4:48209294-48415387 | Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
| 3 | nsv537085 | chr4:48209294-48415387 | Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
| 4 | nsv470032 | chr4:48251915-48312389 | Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:48294800-48295200 | Enhancers | K562 | blood |
