Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR2F2	chrX:122868412-122868749	K562	blood:	n/a	n/a
2	RXRA	chrX:122868519-122868850	HepG2	liver:	n/a	n/a
3	NR2F2	chrX:122868368-122868782	K562	blood:	n/a	n/a
4	SP1	chrX:122868524-122868821	HepG2	liver:	n/a	n/a
5	NR3C1	chrX:122868517-122868726	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:122865256..122866857-chrX:122868534..122870553,2	K562	blood:
2	chrX:122865390..122868661-chrX:122991432..122995679,4	K562	blood:

Variant related genes	Relation type
THOC2	TF binding region
ENSG00000101966	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11723080	0.84[EUR][1000 genomes]
rs11947400	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1812667	0.82[AMR][1000 genomes]
rs2271265	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs309887	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4695369	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55784928	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55860639	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62309366	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62309371	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62309372	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62309393	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62309398	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62309399	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62309400	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62309401	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62309402	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62311477	0.82[AMR][1000 genomes]
rs62311483	0.89[AMR][1000 genomes]
rs6833004	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:122867200-122870200	Weak transcription	NHLF	lung
2	chrX:122867200-122870400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chrX:122867400-122869600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chrX:122867400-122869600	Weak transcription	Fetal Intestine Small	intestine
5	chrX:122867400-122869600	Weak transcription	A549	lung
6	chrX:122867400-122869600	Weak transcription	HSMMtube	muscle
7	chrX:122867400-122869800	Weak transcription	Fetal Intestine Large	intestine
8	chrX:122867400-122869800	Weak transcription	HepG2	liver
9	chrX:122867400-122869800	Weak transcription	HSMM	muscle
10	chrX:122867400-122869800	Weak transcription	Osteobl	bone
11	chrX:122867400-122870200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chrX:122867400-122870200	Weak transcription	NH-A	brain
13	chrX:122867400-122870200	Weak transcription	NHDF-Ad	bronchial
14	chrX:122867400-122870400	Weak transcription	Fetal Heart	heart
15	chrX:122867400-122872200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chrX:122867400-122874400	Weak transcription	K562	blood
17	chrX:122867600-122870400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

Quick Search: