Variant report

Variant	rs62309758
Chromosome Location	chr4:56423069-56423070
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:56365528..56368326-chr4:56420922..56423557,2	MCF-7	breast:
2	chr4:56417353..56420509-chr4:56422017..56425975,3	K562	blood:

Variant related genes	Relation type
ENSG00000238585	Chromatin interaction

Extended variants
information (count: 123 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:120)

rs_ID	r²[population]
rs10012559	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10034170	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1021306	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1021307	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10462033	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1048004	0.81[EUR][1000 genomes]
rs10529258	0.84[ASN][1000 genomes]
rs10866424	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11240	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11732481	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11932595	0.87[ASN][1000 genomes]
rs11939971	0.82[EUR][1000 genomes]
rs12505265	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12509047	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13133077	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13134079	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1488941	0.95[ASN][1000 genomes]
rs1522109	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1546004	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17721215	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17722870	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17722979	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17779627	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1801260	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1906676	0.81[EUR][1000 genomes]
rs1967078	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1979604	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1979605	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2070062	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2101476	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2130038	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2130040	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2412658	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2412659	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2412661	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2412662	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2412664	0.86[ASN][1000 genomes]
rs34299771	0.82[ASN][1000 genomes]
rs3792603	0.81[ASN][1000 genomes]
rs3805156	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs41324951	0.81[EUR][1000 genomes]
rs4336288	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4865006	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4865012	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4865014	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55729020	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55869433	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs55885973	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56056791	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56152424	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56196624	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57338268	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57826934	0.87[ASN][1000 genomes]
rs58476959	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62303686	0.81[EUR][1000 genomes]
rs62303690	0.81[ASN][1000 genomes]
rs62303691	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62303692	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62303708	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62303709	0.81[ASN][1000 genomes]
rs62303711	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62303712	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62303713	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62303715	0.91[ASN][1000 genomes]
rs62303716	0.91[ASN][1000 genomes]
rs62303718	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62303722	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62303724	0.91[ASN][1000 genomes]
rs62303726	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62303728	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62303730	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62303731	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62303732	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62305264	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62305265	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62305266	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62305267	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62305268	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62305269	0.95[ASN][1000 genomes]
rs62305270	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62305271	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62309728	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs62309729	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62309730	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs62309759	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62310862	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62310866	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6554282	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6554283	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6554284	0.85[EUR][1000 genomes]
rs6554285	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6554287	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6554290	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6554291	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67963898	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6802	0.81[EUR][1000 genomes]
rs6822553	0.89[EUR][1000 genomes]
rs6828474	0.91[ASN][1000 genomes]
rs6830728	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6846764	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6848755	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6851971	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6853506	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6856004	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs716806	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73236140	0.80[EUR][1000 genomes]
rs73236142	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73236149	0.95[ASN][1000 genomes]
rs73236153	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7659095	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7660668	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7665286	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7665846	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7676245	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7681414	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7683997	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7697067	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7698022	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs972446	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9993599	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328582	chr4:56164136-56486156	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	esv2755990	chr4:56317136-57143037	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
3	nsv10496	chr4:56336946-56841137	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56416800-56425600	Weak transcription	K562	blood
2	chr4:56418800-56431800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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