Variant report

Variant	rs62318123
Chromosome Location	chr4:107273254-107273255
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs62318079	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62318080	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62318082	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62318085	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62318087	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62318088	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62318089	0.84[EUR][1000 genomes]
rs62318090	0.82[EUR][1000 genomes]
rs62318091	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62318092	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62318093	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62318116	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62318118	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62318124	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62318125	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62321382	0.83[EUR][1000 genomes]
rs72660519	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72660521	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72660524	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72660532	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830029	chr4:107203096-107353483	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107258600-107281400	Weak transcription	Fetal Heart	heart
2	chr4:107260200-107274400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr4:107260200-107274400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr4:107260200-107275800	Weak transcription	Spleen	Spleen
5	chr4:107260200-107276000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr4:107260200-107276600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr4:107260200-107276800	Weak transcription	Psoas Muscle	Psoas
8	chr4:107260400-107274400	Weak transcription	Brain Germinal Matrix	brain
9	chr4:107260400-107276000	Weak transcription	Brain Angular Gyrus	brain
10	chr4:107260400-107276600	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr4:107260800-107273600	Weak transcription	Thymus	Thymus
12	chr4:107260800-107274000	Weak transcription	Aorta	Aorta
13	chr4:107260800-107274200	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr4:107260800-107276000	Weak transcription	Esophagus	oesophagus
15	chr4:107260800-107276000	Weak transcription	Fetal Stomach	stomach
16	chr4:107260800-107276600	Weak transcription	Pancreas	Pancrea
17	chr4:107260800-107285400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr4:107261800-107276600	Weak transcription	Ovary	ovary
19	chr4:107262000-107274200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr4:107262200-107276600	Weak transcription	Brain Anterior Caudate	brain
21	chr4:107264400-107274000	Weak transcription	Left Ventricle	heart
22	chr4:107266400-107274600	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr4:107266600-107276400	Weak transcription	NHLF	lung
24	chr4:107268400-107276600	Weak transcription	Gastric	stomach
25	chr4:107268800-107274000	Weak transcription	HSMMtube	muscle
26	chr4:107269000-107274600	Weak transcription	HUVEC	blood vessel
27	chr4:107269400-107276000	Weak transcription	Small Intestine	intestine
28	chr4:107270000-107273800	Weak transcription	Colonic Mucosa	Colon
29	chr4:107270000-107276200	Weak transcription	Fetal Muscle Trunk	muscle
30	chr4:107270200-107274000	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr4:107270200-107274400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr4:107270200-107274400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr4:107270200-107274400	Weak transcription	Fetal Brain Male	brain
34	chr4:107270200-107276400	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr4:107270200-107276400	Weak transcription	K562	blood
36	chr4:107270200-107276600	Weak transcription	Brain Cingulate Gyrus	brain
37	chr4:107270200-107277200	Weak transcription	A549	lung
38	chr4:107270200-107280400	Weak transcription	NH-A	brain
39	chr4:107270400-107274400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr4:107270400-107276200	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr4:107270400-107276200	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr4:107270400-107277000	Weak transcription	GM12878-XiMat	blood
43	chr4:107270400-107277600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr4:107270400-107280000	Weak transcription	Fetal Kidney	kidney
45	chr4:107270600-107286200	Weak transcription	HepG2	liver
46	chr4:107270800-107274000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr4:107270800-107274400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr4:107270800-107275400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr4:107270800-107276400	Weak transcription	Liver	Liver
50	chr4:107270800-107276600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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