Variant report

Variant	rs62320113
Chromosome Location	chr4:106955112-106955113
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106954975..106957193-chr4:106960681..106963190,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10489129	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11942385	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17036506	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17036511	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17036530	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17036535	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4264831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4472215	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4552462	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62318075	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62318080	0.93[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62318082	0.93[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62318085	0.83[AFR][1000 genomes]
rs62318087	0.93[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62320069	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62320070	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62320112	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62320115	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62320116	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62320117	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62320120	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62320124	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62320128	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62320129	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62321362	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62321363	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62321364	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62321366	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62321372	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62321373	0.93[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs62321374	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62321375	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62321376	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62321377	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62321378	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62321380	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs67566720	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6853347	0.89[EUR][1000 genomes]
rs72675686	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72675692	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72675702	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72677343	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs72677353	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv522792	chr4:106895964-106982793	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106953600-106956200	Enhancers	NHDF-Ad	bronchial
2	chr4:106953600-106956800	Enhancers	HSMMtube	muscle
3	chr4:106953800-106956000	Enhancers	Muscle Satellite Cultured Cells	--
4	chr4:106953800-106957000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:106953800-106959600	Enhancers	HepG2	liver
6	chr4:106954000-106956000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:106954000-106956200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr4:106954000-106956200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr4:106954200-106956400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr4:106954400-106955200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr4:106954400-106955400	Enhancers	Fetal Heart	heart
12	chr4:106954400-106955800	Enhancers	NHEK	skin
13	chr4:106954400-106956200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr4:106954400-106959200	Weak transcription	Pancreas	Pancrea
15	chr4:106954600-106955800	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr4:106954600-106955800	Weak transcription	Fetal Muscle Leg	muscle
17	chr4:106954800-106955800	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr4:106954800-106956000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr4:106954800-106956000	Enhancers	HSMM	muscle
20	chr4:106954800-106959200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr4:106955000-106955400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr4:106955000-106969600	Weak transcription	NHLF	lung

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